Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_001740272.1
- Aligned Length:
- 4945
- Identities:
- 187
- Gaps:
- 4730
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTCTAGTCAAGTGCCAAAAGAGCCCAATGTGTGTTCGGGTTTCAATTCTCCAGTCAGCGTCAGAGTTGGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTCAATTTTAAAGAAGGCAAAGCCATGGTCATCGTTGCGGGTAAGGAACAACGCAGAAGCCTCTTCCACCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAATTTAATGCAACAGCAGGCGGAAGACCTGCAGGGTCCCGTTCAGAAAAAGGGCCGTCAGACTGTCGAGCCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAATAAAAAGACCCTGTTTCTCTTAGATACCCGGTTAGCAAGGCAACATCGCTGGCCTCCTGCCCTGGACACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATCACCCCGGTGCTGCTGCGGCCGGGTTTAGCCGGCCCAGCGAGGAAGGAAGCCGAAAGAGCCAGGTTTTTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGAGGGGGAGCGATGTCTGCGACGCACCGGAAGCGGCTCCGAGGAAGGCCTGTGGGAGTCTCGGAGACGTGTCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTCTGTGAGGCGCTGGGTGCACGTCCCCAGGGCTCTGGGCTAGGAAGGCAGCGGCGAGGTGCCTCCCCACGTAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCTCGCGGGCCCAGCCGAGCAACGTGGGGCGAAGGCGGCGGCGAAGGCCCGGGCTGGGAGCGTTGGCGGCCGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTCCCAGCCATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGAGGAGTCTGCAGGTCCCGAGGAGCGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTGTTAAAAAAAAGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCATGAAGAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATGAATGGGGTATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTTACCTGAAGGAATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AAGATTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATGTAGATAATGGACTGGGATATATTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TATTTCTCATGTTAAAGCCTCTTCCCTTGAAATTAAAAAAAAATTTTAACTGATAAAACTTAGGGCAACATTAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTAATGTATATTCTTACCTGAATTGTTATACTTTTTGAAAATCCTGTGACTTGCCTGTTTCTCCCCGCTCCAAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GAAATCATTAACTCTCCTAAAATGTGTTTCATTCTAGTAAGAAAACCTCAAAGGATATTGTAGGATATAAATCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACTTGAAAACATAGCTGTTGAAATGTTTTGGCCTTTTGGAGTGGGGGAAGGACAAATCTGATCCTGTAATCTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTCTTTCCAGTAATCCCTTGTGTCTGTTGCATGAGGACATGGACAATAAAGTAGTATATGATCCTCAGATACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGGAGAAGGACAAGGCATACAGCTTATTGATTAGAGCTGGCAAGCATCTGCTCATTATGTTTGGAATTGCTTTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TATAAGAAAATTGCCCACTACTACTAACTTGATCAACAATGAATTCAAAATAGTTAACCTATGAAATAACATCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCTCAAATGTTTGCTGATGAAGTACAAGTTGAAATGTAGTTATTGGAAAAGTCTGTAACCTGTGGATCATATAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTCAAAGTGAGACAAAGGCAAATAAAAAGCAGCTATTTTCATGAATAGACAAAGTTGATTTCAGGAAGTATAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATTATATTCTGCACCGAACAAGGAACAGAAATTATTGCATCTGTGGAACATATATCTGGAGTTACTATACTTTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTGAAGAGCAAGGCATAAATTTAGACTAAAATCCATCCAGATTACACTCATTCTTTAGGCTACTCCTGGATACT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCATTTAAATTTGATTTTCGAGGTAGTGAGATGTCGGCAAGGTTTGTCCTGTATATTAGGAATAAAGGAAAAGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCTAAACTGCCTCTGCAATGACTTGTAGTCAGTGGAAGAGTATCACTTTCCCCTGATCATGACCACTAAACTGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAATTGATATAAATTAGTTTTCTCTCGAGTTACACCCAAGTAATGAAGACTTAAGAGAACCTTGGTTGAAATAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ATTTCCAATAGTTTGGAGACTCATAAATACCATGCAGGTGTAACCACTGCCAATAGGCTGTTTCTATGCTTATT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCCTATTTTGATTTTTACTTTGAAGATAGGAATATCTAAATTATATCTCTAGGGAGAAAATGTTGTAAAAAATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAAAGTACATCCCTGATTGTAAAATAAAGTTCAAAAAACTGATTTCAGAAAGTCTCAACTACCAAATGTTTTCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATATATTAGTTTTGAGATGCTAGGATTATACTGTGATTCTTATGTTTATAGTAAAGTCTGGAAAGCAGAAGGAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGTTTTTTTAGCCTGGAAACTTATTTATGTTGCCTTGGTGAGTCTTCTATCATTTTTTAAAAATTTAGCTTATT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GAACTGTAAAATAGCTTTTCTAGTATGAGAGATGTTTTGAATTTAAAAAATGAAATGCAGTTTTTCAAAAATAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATTTCCTTTGGAAATTCTTGCATATCAATTTAGTAAGGTTTTATAAAATTTTACAATTTGATAAAGTATCACAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTAGAATTCACTGTCTTCTTTTATCTGCTCTCAAGTTGGCATTGCATCACTGCCTGTGTCTTACACTGCACCAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 ATGTTACCTAATTGACCTAACTTTTTTTGTCTAATATCTTTCATTAAAAACAATTGGATTATTTAACCAGAAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAAATCTGGTAATAGAGATGTTGCTATCCTAGAATACTCTCTTGACAGTCTGTATGCCATGAAAACTTGCATAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GAAGGCAGCTGATTACGAAAAATTAATCATCATTGAATTTAGTATTACTAAACTCATAGCATTTGTCCAGATTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTAAACACTATTGATTCTAATGTGAAAGATGGAAAAGCAGTCCCAGAATTGGCTTAGCACAGAGACTCTAAATG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATAGTAAAACAACATATTCAACTTTAATTCCTGTCTTATTGTTAATGGGAAGTTAGTTATGGTTCTACTTAAAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTTGTAGAGAAAATAAGTATTACTAGTTTCTTCTCATAAAAATACTCCCTGGATACGTACACTGAACAACACAA 3774
Query 1 ---------------------------------------------------ATGGAGTCTCATTCTGTCGCCCA 23
|..||||||||.|||||.|||||
Sbjct 3775 AAAACGTAATGGCCACTTAAGAATATTTATTTATTTATTTATTTTTTTGAGACAGAGTCTCACTCTGTTGCCCA 3848
Query 24 GACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTC 96
|.||||||||.|||||||.||||||.||||||..||.||||.||||| |.||| ||||||||||||||||||||
Sbjct 3849 GGCTGGAGTGCAGTGGCACGATCTCAGCTCACCACATCCTCCGCCTC-CCAGGTTCAAGCGATTCTCCTGCCTC 3921
Query 97 GGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGA 170
.||||||..||||||||||||||||||..|.|||.||||.||..|||||| ||||||||||||||||||||.
Sbjct 3922 AGCCTCCCAAGTAGCTGGGATTACAGGTGCCCGCCACCACGCATGGCTAA---TTTTTGTATTTTTAGTAGAGG 3992
Query 171 TGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------- 219
.|.||||||||||||||||||||||||||||.|||||||||||||||.|
Sbjct 3993 CGAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCATCTTGGCCTCCCAA 4066
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4067 AGTGCTGGGATTATAGGTGTGAGCCACCACGCCCAGCCAAGAATATTTACTAAAGGAAGCTTTGACCCCTGCAT 4140
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4141 CACATTTTTTTCATATTTCCCTTTCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGTAGGTCAAGAGGTCAG 4214
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4215 GAGTTCGAGACCAGCCTGACCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGT 4288
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4289 GGTGCGTGACTGTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTG 4362
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4363 CAGTGAGCTGAGATAGTGCCACTGCACTCCAGTCTGGAAAACAGAGTGAGACTCTGTCTCAAAAAAAAAGGTAT 4436
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4437 TGATGAATAAAAATTATAACTAGAATAAGTACTCTAACAATTCAGATTTATAATTGAGTTGTCTGAAAGCTACC 4510
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4511 TTTTTCATTGTGAAAGTGCATATTAATGTGAAGAAAATATTCCTATTTGAGAACTTCAAATATGCATACACAAA 4584
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4585 GATGTTCCAGCTATTTTTATCTTCTTAAGTATGCATTCTACATGAGAACGTTTGGGTTGGTAGTAAAATAAATA 4658
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4659 GTAATATCAAAATAGTTTATTATGTTTAAATTTCATTCTTTTGGAATACATAATTTTGAGTGATCATGTCTCCA 4732
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4733 ACTACAGTTATTCAGGCACAAATTTTGGAGGTACAAAGAATAAATAATATTCTTAAGGTAGTTTTTCCTTTTAT 4806
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4807 CAGGGTTCTTCTAGAGTACTGGTCTCATTATTTTCTAAAGCAGTTTTTCTAAGGTGATAAACCGAACACATTAC 4880
Query 220 ------------------------------------------------------------- 219
Sbjct 4881 TTGCTATGTATTAAATGACTTGTACCACTAAATAATCAAATTCTAAGCTCTAACAGCTTAA 4941
