Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001740272.1
Aligned Length:
4945
Identities:
187
Gaps:
4730

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCTCTAGTCAAGTGCCAAAAGAGCCCAATGTGTGTTCGGGTTTCAATTCTCCAGTCAGCGTCAGAGTTGGAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTCAATTTTAAAGAAGGCAAAGCCATGGTCATCGTTGCGGGTAAGGAACAACGCAGAAGCCTCTTCCACCCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAATTTAATGCAACAGCAGGCGGAAGACCTGCAGGGTCCCGTTCAGAAAAAGGGCCGTCAGACTGTCGAGCCTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAATAAAAAGACCCTGTTTCTCTTAGATACCCGGTTAGCAAGGCAACATCGCTGGCCTCCTGCCCTGGACACT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TATCACCCCGGTGCTGCTGCGGCCGGGTTTAGCCGGCCCAGCGAGGAAGGAAGCCGAAAGAGCCAGGTTTTTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGAGGGGGAGCGATGTCTGCGACGCACCGGAAGCGGCTCCGAGGAAGGCCTGTGGGAGTCTCGGAGACGTGTCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTCTGTGAGGCGCTGGGTGCACGTCCCCAGGGCTCTGGGCTAGGAAGGCAGCGGCGAGGTGCCTCCCCACGTAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCTCGCGGGCCCAGCCGAGCAACGTGGGGCGAAGGCGGCGGCGAAGGCCCGGGCTGGGAGCGTTGGCGGCCGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTCCCAGCCATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGAGGAGTCTGCAGGTCCCGAGGAGCGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GTGTTAAAAAAAAGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCATGAAGAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AATGAATGGGGTATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTTACCTGAAGGAATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AAGATTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATGTAGATAATGGACTGGGATATATTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TATTTCTCATGTTAAAGCCTCTTCCCTTGAAATTAAAAAAAAATTTTAACTGATAAAACTTAGGGCAACATTAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTAATGTATATTCTTACCTGAATTGTTATACTTTTTGAAAATCCTGTGACTTGCCTGTTTCTCCCCGCTCCAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAAATCATTAACTCTCCTAAAATGTGTTTCATTCTAGTAAGAAAACCTCAAAGGATATTGTAGGATATAAATCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TACTTGAAAACATAGCTGTTGAAATGTTTTGGCCTTTTGGAGTGGGGGAAGGACAAATCTGATCCTGTAATCTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTTCTTTCCAGTAATCCCTTGTGTCTGTTGCATGAGGACATGGACAATAAAGTAGTATATGATCCTCAGATACA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGGAGAAGGACAAGGCATACAGCTTATTGATTAGAGCTGGCAAGCATCTGCTCATTATGTTTGGAATTGCTTTC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TATAAGAAAATTGCCCACTACTACTAACTTGATCAACAATGAATTCAAAATAGTTAACCTATGAAATAACATCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCTCAAATGTTTGCTGATGAAGTACAAGTTGAAATGTAGTTATTGGAAAAGTCTGTAACCTGTGGATCATATAT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ATTCAAAGTGAGACAAAGGCAAATAAAAAGCAGCTATTTTCATGAATAGACAAAGTTGATTTCAGGAAGTATAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATTATATTCTGCACCGAACAAGGAACAGAAATTATTGCATCTGTGGAACATATATCTGGAGTTACTATACTTTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTGAAGAGCAAGGCATAAATTTAGACTAAAATCCATCCAGATTACACTCATTCTTTAGGCTACTCCTGGATACT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCATTTAAATTTGATTTTCGAGGTAGTGAGATGTCGGCAAGGTTTGTCCTGTATATTAGGAATAAAGGAAAAGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCTAAACTGCCTCTGCAATGACTTGTAGTCAGTGGAAGAGTATCACTTTCCCCTGATCATGACCACTAAACTGT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAATTGATATAAATTAGTTTTCTCTCGAGTTACACCCAAGTAATGAAGACTTAAGAGAACCTTGGTTGAAATAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ATTTCCAATAGTTTGGAGACTCATAAATACCATGCAGGTGTAACCACTGCCAATAGGCTGTTTCTATGCTTATT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TCCTATTTTGATTTTTACTTTGAAGATAGGAATATCTAAATTATATCTCTAGGGAGAAAATGTTGTAAAAAATT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAAAGTACATCCCTGATTGTAAAATAAAGTTCAAAAAACTGATTTCAGAAAGTCTCAACTACCAAATGTTTTCA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ATATATTAGTTTTGAGATGCTAGGATTATACTGTGATTCTTATGTTTATAGTAAAGTCTGGAAAGCAGAAGGAT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGTTTTTTTAGCCTGGAAACTTATTTATGTTGCCTTGGTGAGTCTTCTATCATTTTTTAAAAATTTAGCTTATT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GAACTGTAAAATAGCTTTTCTAGTATGAGAGATGTTTTGAATTTAAAAAATGAAATGCAGTTTTTCAAAAATAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ATTTCCTTTGGAAATTCTTGCATATCAATTTAGTAAGGTTTTATAAAATTTTACAATTTGATAAAGTATCACAT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CTAGAATTCACTGTCTTCTTTTATCTGCTCTCAAGTTGGCATTGCATCACTGCCTGTGTCTTACACTGCACCAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  ATGTTACCTAATTGACCTAACTTTTTTTGTCTAATATCTTTCATTAAAAACAATTGGATTATTTAACCAGAAAA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  AAAATCTGGTAATAGAGATGTTGCTATCCTAGAATACTCTCTTGACAGTCTGTATGCCATGAAAACTTGCATAA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  GAAGGCAGCTGATTACGAAAAATTAATCATCATTGAATTTAGTATTACTAAACTCATAGCATTTGTCCAGATTT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GTAAACACTATTGATTCTAATGTGAAAGATGGAAAAGCAGTCCCAGAATTGGCTTAGCACAGAGACTCTAAATG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  ATAGTAAAACAACATATTCAACTTTAATTCCTGTCTTATTGTTAATGGGAAGTTAGTTATGGTTCTACTTAAAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  GTTGTAGAGAAAATAAGTATTACTAGTTTCTTCTCATAAAAATACTCCCTGGATACGTACACTGAACAACACAA  3774

Query    1  ---------------------------------------------------ATGGAGTCTCATTCTGTCGCCCA  23
                                                               |..||||||||.|||||.|||||
Sbjct 3775  AAAACGTAATGGCCACTTAAGAATATTTATTTATTTATTTATTTTTTTGAGACAGAGTCTCACTCTGTTGCCCA  3848

Query   24  GACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTC  96
            |.||||||||.|||||||.||||||.||||||..||.||||.||||| |.||| ||||||||||||||||||||
Sbjct 3849  GGCTGGAGTGCAGTGGCACGATCTCAGCTCACCACATCCTCCGCCTC-CCAGGTTCAAGCGATTCTCCTGCCTC  3921

Query   97  GGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGA  170
            .||||||..||||||||||||||||||..|.|||.||||.||..||||||   ||||||||||||||||||||.
Sbjct 3922  AGCCTCCCAAGTAGCTGGGATTACAGGTGCCCGCCACCACGCATGGCTAA---TTTTTGTATTTTTAGTAGAGG  3992

Query  171  TGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------  219
            .|.||||||||||||||||||||||||||||.|||||||||||||||.|                         
Sbjct 3993  CGAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCATCTTGGCCTCCCAA  4066

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4067  AGTGCTGGGATTATAGGTGTGAGCCACCACGCCCAGCCAAGAATATTTACTAAAGGAAGCTTTGACCCCTGCAT  4140

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4141  CACATTTTTTTCATATTTCCCTTTCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGTAGGTCAAGAGGTCAG  4214

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4215  GAGTTCGAGACCAGCCTGACCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGT  4288

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4289  GGTGCGTGACTGTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTG  4362

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4363  CAGTGAGCTGAGATAGTGCCACTGCACTCCAGTCTGGAAAACAGAGTGAGACTCTGTCTCAAAAAAAAAGGTAT  4436

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4437  TGATGAATAAAAATTATAACTAGAATAAGTACTCTAACAATTCAGATTTATAATTGAGTTGTCTGAAAGCTACC  4510

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4511  TTTTTCATTGTGAAAGTGCATATTAATGTGAAGAAAATATTCCTATTTGAGAACTTCAAATATGCATACACAAA  4584

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4585  GATGTTCCAGCTATTTTTATCTTCTTAAGTATGCATTCTACATGAGAACGTTTGGGTTGGTAGTAAAATAAATA  4658

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4659  GTAATATCAAAATAGTTTATTATGTTTAAATTTCATTCTTTTGGAATACATAATTTTGAGTGATCATGTCTCCA  4732

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4733  ACTACAGTTATTCAGGCACAAATTTTGGAGGTACAAAGAATAAATAATATTCTTAAGGTAGTTTTTCCTTTTAT  4806

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4807  CAGGGTTCTTCTAGAGTACTGGTCTCATTATTTTCTAAAGCAGTTTTTCTAAGGTGATAAACCGAACACATTAC  4880

Query  220  -------------------------------------------------------------  219
                                                                         
Sbjct 4881  TTGCTATGTATTAAATGACTTGTACCACTAAATAATCAAATTCTAAGCTCTAACAGCTTAA  4941

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