Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001743167.1
Aligned Length:
4601
Identities:
187
Gaps:
4393

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCCTGGGAGCTGTGTGGCCGCGTGCGCGCTCCGCCGGGGTCCTGGAGGCCTCTGGGCGCGTGCGCGGGCGGTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTACCTGCGGCCGAGCCAGGGAGCGAGAGGGCGCAGAGGGCAGCGGGCTTGGGCAGCATGAGGCCCGGAGGGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGAAGCTGCGCTCGGCGGAGTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAGCCAGCCCGAGCTGGCCTACGAGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCGCCCGCGGCCTCCTGGGCAGTGCAGCCGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGCCGGAGGCCCGGGCACCGAGCGCCACGCCACGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCTGCCCGGCATCGGCCACGCCTGCGGCCACAACCTCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTGAGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGAAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTACAAATCTTGATGTTGTTTTTATGGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACATGATGTGACTGTGAAATACTATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAGATGCTGCTGTGCTGGCCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCCTATATGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGATCTACGGAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATGCCTTGAATCATAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGACGGCCAAAGCTCTGGCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAGGACTTTAAACTGAAACTTCAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAAGAACAGTTTGTAAATGCAGTAGAATAAAAGACTTAGGGGCCACTTATAAATCAAGAAGACGTGATGATTTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTTCTTTTAATCTCTTTTAATGAAGGCATGCTTGTTTTTTAATCTTAAAGGAGTAAAATTCTTTTTACCTGATA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTGAGGACAGGGTGTGGAGAAAACATATTAATTACCTCATATCTAAAGTGAAAATTTTTGCAAATCCGTACTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GATAGGATTATGATATTACAGGAGCTGGTATGTGATGCCATTCTTTCTTTTTTTTTACCCCGCAACCACTCACC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTCACAGTAGTGATACCATTTCTTAACCTGGAGGATACATGGCATCATTTTTATAAAATATGTTAGTAAACCTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTTGTAAGCCTTAAATGTTATGTGTATTTTTAAAAGCTTAAGAGATTTCAAACCTTATATTCAGAATTGACACC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CATGAGAGTGTTTTGTGGTATAGGGTGGTAAACTTGTTCTCTAATCGTATATTAATTCCTCTACCAGATTGTAT  1776

Query    1  ------------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTG  38
                                                ||.|||.|||..|||||.||||||.|||.||||.||||
Sbjct 1777  ATTTGAAGCCAGTGTCTTTCCTTTTTTTGTTTTAAGATAGAGCCTCGCTCTGTTGCCCAGGCTGAAGTGTAGTG  1850

Query   39  GCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGC  111
            |||..||||||||||||||||||||||||||| |.||| |||||.||||||||||||||.||||.|..||||||
Sbjct 1851  GCACAATCTCGGCTCACTGCAACCTCTGCCTC-CCAGGTTCAAGTGATTCTCCTGCCTCAGCCTACCAAGTAGC  1923

Query  112  TGGGATTACA-------GGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTT  178
            ||||||||||       |||       |||||||||.|||||   |||||||||||||||||||||.||..|||
Sbjct 1924  TGGGATTACAGGTGTGTGGC-------ACCATGCCCAGCTAA---TTTTTGTATTTTTAGTAGAGACGGCATTT  1987

Query  179  CACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------------------------  219
            |||||||||||||||||||||||||||||||||||||||.|                                 
Sbjct 1988  CACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATGCACCTGCCTCGGCCTCCTAAAGTGCTGG  2061

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2062  GATTACAGGCATGAGCCACCGCACCCGGCCTGCCAGTGTCTTTTTAATACACATGTGTGTTGGTATTTTTAAAT  2135

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2136  TGTTACAGTATCTAGCATATTGCTTACTCTGAATATTCAGTACTTTTTGAATAAGCAAATATTGCTTCCTTGCT  2209

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2210  TGGAATCATCAGAGTTTAAAGTAGCTTCGTGGATGGACCATGATCCTAAGATGAGTTTTAATTTTGTGTTTACA  2283

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2284  GTCATCTCTTGTACAACGTGGAGAAGAAAAGATATACTTACTACTTTGCTTCAGGTACACATAAGAAAACCTCT  2357

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2358  TTTTTAAAAAAATTTTTATTTTTTTACATAATAGAGACAGGGGCTCGCTGTAGCTTCCAGGCTGGCCTCAAACT  2431

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2432  CCTGGGCTCAAGCAATCCTCCTGTCTTGGCCTCCCAAAGTGTTGGGATTTCAGGTATGAGACACCACACCTGCC  2505

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2506  CATTTTTGTTTGGTTTTTTAATGGGCAGGTTCTTGCTCTCCCAGGCTGGAGTGCAGTGGTGTAATCACAGCTCA  2579

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2580  CTGCAGTCTCGAACTCCTGGACTCAAGCAGTCCTCCCACCTCAGCCTCCTAAAGCACTGGGATTACAGGCTTGA  2653

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2654  GGCACTGCACCTGGCCCTGACCATTTTTTAAAAAGGTTAGGCTTAGTGCAAAGTTTAAAATTATATGATTCTTA  2727

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2728  AAATACTGAATTAGTTTCTAAACTAAACTAGAGGTATAGGTGGACCTGCTTGAGGTATCTTTGTTTTTATGGAA  2801

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2802  CATTTTTATTACATGCCTTTATAATTTTTCATTGTTCACACCCTGTACTGAAACCTTTTTCTCAAATACCAACT  2875

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2876  CTTGGCTATGTTAAATTTGTAGACTTTAAAAGATGTTATCTAAATTAATGGTTTAAATATACAAATTGAAAATA  2949

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2950  TTTTCTTTTTAGTGGCAATTTTAAAAGCAGGCCTTAATATGGGACCTGCTTTTAAAGTAAAATATGTGGTACTA  3023

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3024  TGAATTACTAAATTGCTATATACCATGTAATAGTGAGTATAGCTAATATTTAGTATGCCTTTTAAAAATTTTGG  3097

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3098  ACTGCTTTTCGGTTTTAACAAATTCTCCACATGTGAACTACTCAAGAAATTTTCCCTTTTTAATTGCCTCTATA  3171

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3172  GCACTCATAAGAGCTAGGGCATTAGGATAAACTAGAATATTTTATGTTTATGAATACTTGTATAAACTTAAAAG  3245

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3246  TGTTTTGATTTCCCACAATTTCCCAAAGGAATGTTTATTTATTAAGAGTTGTGTTGATAATTTAACTGTTACAA  3319

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3320  TTTCAGCAGTTGAATTCAGTGAACACTGGTTGAGGAGTGCCTATTTCTAAGCACTGGGTGTAAGAAGAAAAGAC  3393

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3394  ACTTGCAAAGGAAGAGCTAAGATTAACATAATTTCTTTGGTTTTTCTATTGCTTGTTATTATTATGTAAAAACT  3467

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3468  GGGTGGCAGTTCACAAGGAAGATTGTTGTAACAGAAGAGTGACAACCAATAGTTTTTTGATCATTAAATCAAAT  3541

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3542  TTTGTAAACAGTGGCAGGAGCGTGGACTTAAAACAAGGCTTGCTTATTTGGTTTTGTCAAAGTTTTACGAAAAT  3615

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3616  ATATGATATATATTTATACTAAAACTATATAATCCTTAGATTTAGGAAAGCAATCAGTTAATGTCTTTAGCACA  3689

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3690  CTAAAGCAGTATTAAACACAGGTACAAGTTGGAAATTGTAGAAAACTGAAAGAAAACAAGACAAAATGTCTATG  3763

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3764  GTAGGGAATAAAAGAGTTTAAGATATTATGTAAAATTATGTGTATTTTCTTCTCTTTTACATAAATTGTTTGTG  3837

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3838  AAAAGTGTGCTCAACTTTTTTACAAGAGTGATATTAACTTGGATTTATTTTTCAATATAATTTGGAGACCCTTT  3911

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3912  GTTATCCAAATAAAATTGATGAGTTTCTGTGCCTGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGACACTGT  3985

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3986  TGCATGCCCCAGAAAGCTTGTGGTGGGTGGTAAGTTCTCACGAGATTTATTTATCTGAGCAACATTGGGACTGA  4059

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4060  GGGAACATCTGAAAGCTACCATCTTGAAAATTTTTGAGGAAGTGTTTCTGAAATATTTAAAAATACTTAAGTCA  4133

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4134  GTCATTTTGAACAAAAGAAATTGATACAATAAGTTTTTTTTTTTAAGGATGATTGTCTAATTTTGTAATATGTT  4207

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4208  GTTTTTTAAAAACCTGTCTGATGGTGTTTTATACATTTCTAACTTTTTACCTGAGTTATCTCTTTAGTCTTTTG  4281

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4282  GAAAATACCCTACACAATACTAACCTTTAAAACTATCAAATTTTTGTTATAAGATAAATGTTATCTTTGTACTA  4355

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4356  GATAGCAACCCTTTATAAGGTTGTAAGGTATAATAAACTGCTTATTTTTTTACATACTTCATATCAAGCATTTT  4429

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4430  GCAGTCCAATTATATAGTTGAGGATGGTGTATTTTGATATGTATGAAGTTAATATTTTCAAGTAAGCAATCAGT  4503

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4504  CTACTACCATCAGATTATAAGCTTTTTTGTAATAATAGGTACATAAAATGTGTATGAAAAATCTACAATAAACA  4577

Query  220  -------------  219
                         
Sbjct 4578  TGTTTATCTGATA  4590

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