Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_001745270.2
- Aligned Length:
- 6730
- Identities:
- 96
- Gaps:
- 6621
Alignment
Query 1 ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATT 148
|||||||||||||||...|.|||.||||.|||.||||||
Sbjct 1 ---------------------------------TAGCTGGGATTACAGATGCCCGCCACCACGCCTGGCTAA-- 39
Query 149 TTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--- 219
|||||||||||||||||||.|.|||||||||.||||||||||||.|||||||.|||||.|||||||||||
Sbjct 40 -TTTTTGTATTTTTAGTAGACACGGGGTTTCATCATGTTGGCCAGACTGGTCTTGAACTACTGACCTCAAGTGA 112
Query 220 -------------------------------------------------------------------------- 219
Sbjct 113 TCCATCTACCTCGGCCTTCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGTGCCAGGCCGAAGCAAGTATATT 186
Query 220 -------------------------------------------------------------------------- 219
Sbjct 187 AAAATCACTCTTAAATTCAAATATTAGAATGCTGTTATTCTATGAAATAGATTTGTAGTTTCTTTTTTAAAAAA 260
Query 220 -------------------------------------------------------------------------- 219
Sbjct 261 AAATAAATTTAAGTTTTTTAAAGTTTAGAGAGAGGATTCTGTGAAACTGCCCTAGGGTGGTTGCTAGCCATGCC 334
Query 220 -------------------------------------------------------------------------- 219
Sbjct 335 CAAAAGGTAGATTCAGATTACACTGTGTGTAAGTGCAAGTGAACTAAACTTTGCAATTTGTCTTGTCCCATCTG 408
Query 220 -------------------------------------------------------------------------- 219
Sbjct 409 TTACAAACTTCACAGTAGGGAGCCTGGCATTGTCAGTTGCCTTAAGTGACCGGTTGTGAATGCAAACAAAATTT 482
Query 220 -------------------------------------------------------------------------- 219
Sbjct 483 GTGTGTACTTTTCTAGTTTTTTGCTAGAGTCAAAAATACATCACGTTCTTGGTGCTCAGTTTTCACTGAGCCTG 556
Query 220 -------------------------------------------------------------------------- 219
Sbjct 557 TGGAAATAGGGTTTATGGCAATTTTGAAGACAAAAGAGTGTGTAACCAATAGAAAGAATGTTTTCTATATCCCC 630
Query 220 -------------------------------------------------------------------------- 219
Sbjct 631 ATTGATCTGGTTTAAAATGCTCTCTGTGTGAATCTAAAACTATTTTAGAAATAGTTTAAAATTAAATTTAAATT 704
Query 220 -------------------------------------------------------------------------- 219
Sbjct 705 ATTTAGCCATGAGAAATAAATGCAGACAAAGAGTTTAAGGAAGCTGACTAGCTCATACCATTCAGAAGTTTGTC 778
Query 220 -------------------------------------------------------------------------- 219
Sbjct 779 TTTCAAGCAGTAACCTAGAAGATAATCCATTAATTATGAAAATAATTTTAATCATGTGGTATGGATATCTTTAA 852
Query 220 -------------------------------------------------------------------------- 219
Sbjct 853 TAGACATCATCATAACATATTTGGACTCCTTGAAATTGTCTTGTGTGTGAACAAAACAAACTCAATTTGCCTTT 926
Query 220 -------------------------------------------------------------------------- 219
Sbjct 927 TACAGATTTTAAATAATTTTGAAATAAGTTAAATATAAATATATATTAATGTAAAATTAACATATTAAAAGATC 1000
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1001 TTTGAAGAAACTAAGCATTAAATCTGTGTATAATCAGACTAAAGCATTTTATTCCAGTAACTTTTCTGAAATAC 1074
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1075 AAATTACCTCACATAAAACTCATGTTCTACTTTCCTTAAAAATAAGACACTTTATCTTATGTGCTTTAAAGCAA 1148
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1149 ATGGATTATTAAATAATGTAAAAGCTTAATAAATTACCAGCTGGTCGAACTATTTATTAATTAATGAGATAAAC 1222
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1223 TTGAGGAGAAAGCAATAATTATAAATATTCTTTTAAAATGTAAATTGATGACCTGACAAGGTTTTTCATTATAA 1296
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1297 ATATATTAATATCTGTTGTATATAGACATTTTTATGCTATGTATTTCATTTTCTCCTGCTCATTTCTAAATTAA 1370
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1371 TTACAGGCATTAGAGAAGCTATAAATACTAAAAGTCAGATTCAGCTGTCTGCTTTCAAGTGTATCACACCAAAA 1444
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1445 TCATCGATCTTTGAGAAAACATAGTAGGACAATTCTTTACATAATTGTATAATTATAACCCATGTTGAAATTAG 1518
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1519 CAAAGTCAAAAGAAAACATTAAACAGTTTTTCTTTTCTAAATGTCATAAAGACTTTGTAGAATACTTATATTTA 1592
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1593 TAATGGGTAATGTGGTTACATTTTGCATTACACTTCAGCTACTAATGTTATAAATGATTAAGCTTGAATGAATT 1666
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1667 TTGGAGTCTCACATCTAGTATATGCTTGTTTTTTTTTTCGGTCAGAAACATTTTATGCTTATTTCTTTCTCTTC 1740
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1741 ATTTTGAAGATTAAGGAAAGATTACTTTAAGACTTGAACTTGGCACTTTGCATATCTCTTTGGTTCATGCAATA 1814
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1815 GTCTTTCCAAGGCTTGTGAAAAATTCTTCTAAAAGGACAAGGTGAATTACTTGGCTAAGATACAGATGCCAATA 1888
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1889 TATATACAAAGAGAACAAAGCTCTATGAAATGTACAGAAGGATCCTGCTCTCCTGCTTGAACATTTAACTGAAA 1962
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1963 GGAAAAGAACGGAGGAAGCCAGAGTAACAATAACCACATGCCTTTTCCATAAATGATTCTTGCACAGGATTTCA 2036
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2037 AATACCAGAAGATGGAAGGTTAATAAATGTAGGAAGATTTTATCCATACAAGTTGAGAAAAAGTTAACATATGT 2110
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2111 AAAATATGGAAATGATCTTCTAAGTGTCTATTGCCTTTGAAAGGTATCATTCTCAAGTTAATTCACCAGTTAAT 2184
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2185 TTCATGTCATCTGAAGTTTCTCTATTAAAATTTAAGTAAGAGATTCTCATTTGGGAAACAACTTCTAAATATTT 2258
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2259 CAGAAACACTTACCAACATAACCACAGTGTACTGAATTTAGCTTGTACCAACTCAAGAGAGCTAATTGTGCATG 2332
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2333 TATATTCACAACTCTTGTGTTTCAGTGCTGTCACAATAGTGCTTGGAATCGAGTGTGGTGGGAGATTTTACAAC 2406
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2407 ACAGAAATAAAAAATTACTATTTTTAAATATTTTATTTAATTATTCCTATCAGCCTATGAGTATATTTCTATAT 2480
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2481 TTTTATACAATTTTTATTCCTGTTTTACAAACAGAGAAACTGAGATGGAGAGGTCATCAGCCCAAAGTCATAGT 2554
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2555 GTGAATGGTGGAGCCAGGATTTATGCTCAGGCAGTGTAACTTCATAGCCTTTGGTCTTAGCCACAATGCTACTC 2628
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2629 TGCTTCCCAATAAATATTTAGTCAAAGTTTATTCATCAGTATAGAATGATGACATTATTTATTATTTATTGACT 2702
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2703 GCATAAACCCAAATTATCAAACACTTTTTCAACATTCTCTCAAAGAAGTAAATTCAATATATCTAACTTGAAAT 2776
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2777 TTAGGAGCATTAAAAAATTAGGAAAACTATTTTATAGAACCAGAGTTTTTCATGGGGACAGGTGCTAGGGTTCT 2850
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2851 CTGCTCCAGAATTCTGATGCTTAAAATGTTGCATATTTGTTTTAGATGGAAAAAGAGGGTGCTGGCAGAAGGAT 2924
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2925 CCCTGGTTGGGCAGCGACATGCCAGTGTGTCCAGAGGAGTTCCCTGCCTGCCAGGAATCTCAGCAGACACAGTG 2998
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2999 ATGTGAAGGAGCAAGACAAAATGCCAGATGGGGTAACACATAGAAAAGGCACGGAGAAGTTAAGTGATTTGCCT 3072
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3073 GTGGTCACAAAGCCTGTTAGCAGCAAACCCAGAACAAGAACCTAAGATTTATGACCGCCAGTTCCAGCTGTTTT 3146
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3147 TCTTCGTCATGTATCCTCAGCAATCAACATAATCAAAATCTGTTTGGAGACTACTGATTTGTATAAAGGAAGAT 3220
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3221 AACACCGAACAACCAAACAGGAAGTAATCCAGCGAATCTGGAACAGCGGTGGAATTTAGAAGCAAGGCCAGATG 3294
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3295 AGGACCCTAAGACCTAGAGAAACTAAGTCATTTGCTCAAGAAGACAAAGGTAATCATCAGAAATCAACATGAGA 3368
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3369 TTTCAGCTCTCCTGATCCTTAGTACAACATGTGAAAGAAGATATGTTGTCTTTACTCACAGTGGAGGCATTTTT 3442
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3443 CTAGCTGTGTTTGATTTGGCTTCCCTATAGATTCAGGACCCATAACTCTTGTTCTCACTCATCTGCTATGCTGC 3516
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3517 TGATAAGGACTTTCAGGTCAACAGCTGTAACTGCTAAATGAAGTTAATACTCTGGAAAAAAAAAAAAAAAAAAA 3590
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3591 ACCAGAAGGAACAGAGACCAAAAGATTGAAAGCCATTTGGAAATTTCTTGAGTGGTGTCTGGCAGGTCTTTTAT 3664
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3665 GAAGATTATCATAAACCAGGAAAAAAAAAAAAAACGCCTGCTGACTGTGTTATCTGTAGTGCCTATTGCCTATT 3738
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3739 TTGGCTGATTCATTGATGGTGTAACAGATAACAGAATGAAAGGAAATGGTTTGGTTTCTATAAAGGAAAAAGAA 3812
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3813 TGGTTTGTATAAGGAAACCATTAGTTTCCTGAGATTGCTATACCAAATTATCAAAACTTGGTGTCTTAAAACAA 3886
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3887 TAGAAATTTTTTCTCCCACAGTTCTGGAGGCCAGAAACTCAAAATCAGTATTTGGCGGCTGAAATCAAGGTGTT 3960
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3961 GGCAGCACCCTCTGGAGGCTCTCGGACAGAATCTGTCCCTTGTGTCTAACAGATTCTGCTGGCTGCTGGCATTC 4034
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4035 CTTGACTTGTGGTCGTATCATTCCCATCTCCTCCTCCATAGTCATAACGCTTTCTCCTCTTCTCTGGCATTTGC 4108
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4109 ATCCCTTTTATAAGACACGTATGACTGCATTTAGGGCTCACCAGGATAATGCAGGATAATCTTCCTATTTCAGG 4182
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4183 ATCCTTTGCCACATCTTCAAAGTCCTTTTTGGCCAATAAAGTAATATTCACAGGCTCCAGGTTTTAGGATGTGG 4256
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4257 GTAGTGGTGTTGGGGTGGGGGGCAGATTTGGGGGTGAACAACCAGCCTACTACTGGTGGGTGACTGGTTATCCA 4330
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4331 TCATTCTTAAGTCAGAAATGATGACCCAAAATCTCTTTTTGCTTTTGCTTCACTCATTTTGCATTTAATTACTA 4404
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4405 GGCTCTGCTTCTTCAGACACTTTTATTACAGTTTAGTTTTTGCTACATCCCTCAAAAATGTCTTATTATTTTCA 4478
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4479 CGGCCTGTCATTTAGTTATGTTTTCTTCTAAGTGTTTGGCTGTCTTGGTCAGTGCTCTAAAGGAATTAAAATCA 4552
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4553 CTTGGTCAGGGCTCTGAAGTAATTGGTCAGTGCTCTGAAGTAATTAAAATCACTGTGAAGCTGAATGAAAAATC 4626
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4627 AGAAGAAGAATCAAGAGACCTATGTTTTGCTTGTTAGGAGAACTGTGTATCCTTTATGTCTATTTTTGGAGTTG 4700
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4701 GTGGTAATTTCTGGTCAAGGAATCAAATGTTCTTATTCCTAACCATATAGTCAGATAAGATGGCTAAGGTGCTT 4774
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4775 TCATAATCACCATTGATTCACTGTCAGATGGGCCCGTGCTCTGTGACAACTTTTCAATATTATAGACTTTACCA 4848
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4849 AATAAAAAGGTATCTCCTCATTCTGTGCACAGAAAAAGAAAATGATGGATGAGTATATTAGCCAGAACCCTGTC 4922
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4923 GCAGAAAAATAAGCATGAGTGTGCCCTTTCATGCCTCCTGAGAACTCCTGTGCTAGACAGAGCCTGTTCAAGAT 4996
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4997 GTCTTTTCTGACTTTCTGATTCCAGTTGACATCTAGGCATATAAGGCAACTTTGTGATGGGGCCAGAGAGCACC 5070
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5071 ACACATTGTTGTGTATGAAATACTCTATTCAGCAAACAAGCCGTGCAGCAACAAGACCTAGTGTGGTCAAGGAT 5144
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5145 GGTGGACTAAAAACCACTATGAAAGCAGAGATGTAGCCACCTCTGAGACTGGTTTTCTAAGCAGGATGACTTGG 5218
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5219 TTCCATCCCTACAGGCATCGTCTGGTCCAGTTCAGCACAGAGCTAGCTGCAAGTGACAACCTAAGAGAAAAGTC 5292
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5293 AGCGAGAACAAAGATCCATCTCTTCGTTGACTGCCTTAATCCCTAGAGCTGTGTTCTTCAATTTGTTACTATTT 5366
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5367 GCTACAATTTTTCTGCCTAACAAGCAAGTTCTATCCTGCCTAGGAGAGAAACTTTTAGTAAATTCATCTTCATT 5440
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5441 CACTACTATTCAGCTCATGCTGTAAAAACTTAGATAATGCTGTCTGAAATACTTAACTCCTGGTCAAATGCAGC 5514
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5515 TGCTATTTCATTCAGTATAATCAAAGAATAGCCAAGGACTTTAGTTAATATTTCTTCAGATGATAGAGAATAAA 5588
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5589 CAAATTGTTTTGGATATATCTACCATGCCCTCCAAACATGATTGTTGATATCTTTTCTATATAAATTACTTTCC 5662
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5663 TACATAAATGGTACTTAGCTTTTCCTTGAAAGATATGCTCTTCTCTCCAGCTCAAAGATAACCCTCTTTCCCTC 5736
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5737 AAATTATAAGTAATTTATATTTAATAATCTTTCATACGAATTTTTAAAATTACAAATGGTAAGGTACCACTATT 5810
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5811 TTTTATTTTGTAACAGCACAAACCATCAAATCAGAAAAAAAGAAAGGTTGAGTATGATCTCTGAAAAATGAATT 5884
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5885 CTAGTAGCATGTATAGCAAAAATCATCTTAGAATGAATAGAAGCCCTGAATAACTCAATGACCACCAGGCTTGT 5958
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5959 CTGCATCCACGTTCTACTTGGTTAACTGTTAAATAATATCTAACTTGTTGCATTGTAAAAACAACATGTGTCTG 6032
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6033 TAAACTGAAAAATAGATGTTATTATCCACCTGGTTTAGTCATAATGGAGAAATGTCCTTCAGTTGCATGATGCT 6106
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6107 CTTCCTATGAATGAGGAAACCAGATCAACATTTCCATTCAAGTTCTAGCTTGCCTATAACATTTCTTAGCTCCT 6180
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6181 TTTGCAAACCAAAAGTGGCAGCAGTTGTAACTGAATTAGTCTAACTGCTCAGACACATGCATTTCTGTTTGGTT 6254
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6255 GCTCTGGTCTCTTCTTGAAGGCCAAGTGCTGTGATCATTTATCATCATCAGAATTGGCTGCCATAACTCAGTGT 6328
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6329 TCCCGGGACCTGCAGTGGGCAGAGCACCAGCACAACCCGTAGAAAGCAGCTCCAAGATCAGCACCCTCTCATAA 6402
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6403 ACCTACCGAGCCAGGAGCATCTTCCAGGCCCTCCACTCTCAGGAGTTTCAAGGAGAAAACAAAATGCTGAGGAC 6476
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6477 TGGGAATGAGAAGCTTCAACCTTGCACAATCTCTACATTTTGCTTTACTCCCAAGAGGGACGAATGAAGAATGT 6550
Query 220 ---------------------------------------------------------------------- 219
Sbjct 6551 TGTTATTGATGCTATGACCACTTCTCTCCCATATTGTGCCCAGTAAACATGGTCTTACTCATTATTGAAA 6620
