Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001748857.1
Aligned Length:
4360
Identities:
186
Gaps:
4149

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAGTTGTAGGCGGGGCGCGAGGTTCTAGTACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGGGCGCGGGGACTGCAACCCTAATCAGAGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTTTCAGGATCAGCTGCACCAGCTTTACTCGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGATTGAAGACCAGAACTGGCAGGAAGCTGCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTCTTGGATCAGCTGAACTATGAGTGTGGCCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGCGGAAATTCTGCCGGGACATTCAGCCCTTTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCTGAAAGTGAGTGAAAATGGAGGGCAAGGAGAGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAAAGCAGCTTTGGAAGAAGGCATAAGAAGGGGATAAACAGAAGCCTCTTGGGGACCCCTGGCTTCCCTCATCA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCTGTCTGTGGCTATCTGTCCCACAGGGCAGAACTGTAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCTGGACATGGCTGGACAAAATTCTGGAGTTGGTACATGAC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CACCTGAAGGATCTCTGGAATGATGGACGCATCATGGGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAGTGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGCACCAGGATGATGACAAGGTGCTCATCTACTCTGTGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTGACTGAAATCATCCGCCATTACCAGTTGCTCACTGAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTACTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ACCTGAAACACAGGCTCATTGTGGTCTCTAATAGACAGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGGCTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGCCCACACTATGCATGGTATCACAAACAGTGCCAGAGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CCAGATTTGCCCTGTGATCTGAGACATTTGAACACTGAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGAAATCATGCCGAATGGTGACCCACTGTTGGCTGGCCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCCACTTCTACACTGATGGACCCTTGATGCCTTCTGACTTCTAGGAACCACATTTCCTCTGTTCTTTTCATATC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCTTGCCCTTCCTACTCCTCATAGCATGATATTGTTCTCCAAGGATGGGAATCAGGCATGTGTCCCTTCCAAGC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGTGTTAACTGTTCAAACTCAGGCCTGTGTGACTCCATTGGGGTGAGAGGTGAAAGCATAACATGGGTACAGAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GGGACAACAATGAATCAGAACAGATGCTGAGCCATAGGTCTAAATAGGATCCTGGAGGCTGCCTGCTGTGCTGG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAGGTATAGGGGTCCTGGGGGCAGGCCAGGGCAGTTGACAGGTACTTGGAGGGCTCAGGGCAGTGGCTTCTTTC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CAGTATGGAAGGATTTCAACATTTTAATAGTTGGTTAGGCTAAACTGGTGCATACTGGCATTGGCCCTTGGTGG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GGAGCACAGACACAGGATAGGACTCCATTTCTTTCTTCCATTCCTTCATGTCTAGGATAACTTGCTTTCTTCTT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCCTTTACTCCTGGCTCAAGCCCTGAATTTCTTCTTTTCCTGCAGGGGTTGAGAGCTTTCTGCCTTAGCCTACC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  ATGTGAAACTCTACCCTGAAGAAAGGGATGGATAGGAAGTAGACCTCTTTTTCTTACCAGTCTCCTCCCCTACT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CTGCCCCTAAGCTGGCTGTACCTGTTCCTCCCCCATAAAATGATCCTGCCAATCTAATGTGAGTGTGAAGCTTT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GCACACTAGTTTATGCTACCTAGTCTCCACTTTCTCAATGCTTAGGAGACAGATCACTCCTGGAGGCTGGGGAT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GGTAGGATTGCTGGGGATTTTTTTTTTTTTAAACAGGGTCTCACTCTGTTGCCCAGGCTAGAGTGCAATGGTGC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  AATCACAGCTCACTGCAGCCTCAACCTCCTGGGTTCAAGCAATCCTCCTACCTCAGCCTCCTGGGTAGCTAGCA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CCATGGCATGCGCCACCATGCCCTATTTTTTTTTTTTAAAGACAGGGTCTTGCTATATTGCCCAGGCTGGTCTT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GAACTGGGCTCAAGTGATCCTCACGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCTTG  3626

Query    1  -----------------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGA  44
                                         |||||||.||..|| |||.|.||||.||||||||.|.|||..|||
Sbjct 3627  GCCAGGATTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTCTTGTTGTCCAGGCTGGAGTGCAATGGTGTGA  3700

Query   45  TCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATT  118
            ||||||||||||||||||||.||||..||.|.|||||.||.|||||||||||.||||||..|||||||||||||
Sbjct 3701  TCTCGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGTGACTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATT  3774

Query  119  ACAG----GCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTG  188
            ||||    |||    |.|||||||||.|||||    ||||||||||||||||||||.||||||||.||||||||
Sbjct 3775  ACAGATCTGCA----CCACCATGCCCAGCTAA----TTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTG  3840

Query  189  GCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------------------------  219
            |.|||||||||||||||||||||||||||||                                           
Sbjct 3841  GTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGC  3914

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3915  GTGAGCCACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTGGATAAAGTTTGGTGTTTTTACAGAGGAGAAG  3988

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3989  CAATGGGTCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCTTTTTTGTACAATATGTTGTTTACCTGAAAGG  4062

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4063  AAGGTTTCTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTCTGTGGAACTTAAAACCTTGAAGGTCTGTCA  4136

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4137  TAGGACTCTGGACAATCTCACACCTTAGCTATTCCCAGGGAACCCCAGGGGGCAACTGACATTGCTCCAAGATG  4210

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4211  TTCTCCTGATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACAGGTGGCTGTTTCTTGTCTGTTATGTCAGAGG  4284

Query  220  --------------------------------------------------------------------  219
                                                                                
Sbjct 4285  AACAGTCCTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCTAATAAACTTTGTGCTGATCTGGAAA  4352

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