Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001748858.2
Aligned Length:
4237
Identities:
186
Gaps:
4026

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATTGGAGGGCGCGGGGACTGCAACCCTAATCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCCCCTTTCAGGATCAGCTGCACCAGCTTTACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTCTGGATTGAAGACCAGAACTGGCAGGAAGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCACTTCTTGGATCAGCTGAACTATGAGTGTGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATTTGCGGAAATTCTGCCGGGACATTCAGGATC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTACCCAGTTGGCTGAGATGATCTTTAACCTCCTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAATTGGAACAAGGAGAGCCAGTTCTCGAAACACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGATTTAAGGGCTATGATGGAGAAGCTGGTAAAATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCCGATATAAGATCCAGGCCAAAGGGAAGACACCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAGGAAACTCTCAATGAACTGGACAAAAGGAGAAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AACTACCCTAATCGAGCTACTGCTGCCAAAGTTGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTCCCATTGACCACGGGTTGGAACAGCTGGAGACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAGCTGCTGAAGGAGCTGAAGGGACTGAGTTGCCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTACGCAACGCCCAGGTCACAGAGTTGCTACAGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCATGCCCCAAACTCCCCATCGACCCCTCATCCTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTGAGACTCCAGGAAGGCAATGAGTCACTGACTGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTTCCGGAAGTTCAACATTCTGACTTCAAACCAGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTTGGGACTTTGGTTACCTGACTCTGGTGGAGCAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTAGGTGTGACAGAGGAACTGCACATCATCAGCTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAAAGACCCCTGGCTTCCCTCATCATCTGTCTGTGGCTATCTGTCCCACAGGGCAGAACTGTAGGACTGAGGAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCTGGACATGGCTGGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCATGGGCTTTGTGAGTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAGTGAATCGTCAGAA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCTGTGCAACCGTACAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCACTGAGGAGAATATAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTACTACCAGGAGAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGACAGGTGGATGAACT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGGCTGGTGCCAGAGC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCAGAGCCAGACCAAGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACACTGAGCCAATGGAAA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTGGCCAGAACACCGTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCTGACTTCTAGGAACC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACATTTCCTCTGTTCTTTTCATATCTCTTGCCCTTCCTACTCCTCATAGCATGATATTGTTCTCCAAGGATGGG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AATCAGGCATGTGTCCCTTCCAAGCTGTGTTAACTGTTCAAACTCAGGCCTGTGTGACTCCATTGGGGTGAGAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GTGAAAGCATAACATGGGTACAGAGGGGACAACAATGAATCAGAACAGATGCTGAGCCATAGGTCTAAATAGGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TCCTGGAGGCTGCCTGCTGTGCTGGGAGGTATAGGGGTCCTGGGGGCAGGCCAGGGCAGTTGACAGGTACTTGG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGGCTCAGGGCAGTGGCTTCTTTCCAGTATGGAAGGATTTCAACATTTTAATAGTTGGTTAGGCTAAACTGGT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GCATACTGGCATTGGCCCTTGGTGGGGAGCACAGACACAGGATAGGACTCCATTTCTTTCTTCCATTCCTTCAT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTCTAGGATAACTTGCTTTCTTCTTTCCTTTACTCCTGGCTCAAGCCCTGAATTTCTTCTTTTCCTGCAGGGGT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGAGAGCTTTCTGCCTTAGCCTACCATGTGAAACTCTACCCTGAAGAAAGGGATGGATAGGAAGTAGACCTCTT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTTCTTACCAGTCTCCTCCCCTACTCTGCCCCTAAGCTGGCTGTACCTGTTCCTCCCCCATAAAATGATCCTGC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CAATCTAATGTGAGTGTGAAGCTTTGCACACTAGTTTATGCTACCTAGTCTCCACTTTCTCAATGCTTAGGAGA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGATCACTCCTGGAGGCTGGGGATGGTAGGATTGCTGGGGATTTTTTTTTTTTTAAACAGGGTCTCACTCTGT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGCCCAGGCTAGAGTGCAATGGTGCAATCACAGCTCACTGCAGCCTCAACCTCCTGGGTTCAAGCAATCCTCCT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  ACCTCAGCCTCCTGGGTAGCTAGCACCATGGCATGCGCCACCATGCCCTATTTTTTTTTTTTAAAGACAGGGTC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TTGCTATATTGCCCAGGCTGGTCTTGAACTGGGCTCAAGTGATCCTCACGCCTTGGCCTCCCAAAGTGCTGGGA  3478

Query    1  ------------------------------------------------------ATGGAGTCTCATTC-TGTCG  19
                                                                  |||||||.||..|| |||.|
Sbjct 3479  TTATAGGCATGAGCCACTGTGCTTGGCCAGGATTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTCTTGTTG  3552

Query   20  CCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGC  93
            .||||.||||||||.|.|||..|||||||||||||||||||||||.||||..||.|.|||||.||.||||||||
Sbjct 3553  TCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGTGACTCTCCTGC  3626

Query   94  CTCGGCCTCCGGAGTAGCTGGGATTACAG----GCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTA  163
            |||.||||||..|||||||||||||||||    |||    |.|||||||||.|||||    |||||||||||||
Sbjct 3627  CTCAGCCTCCCCAGTAGCTGGGATTACAGATCTGCA----CCACCATGCCCAGCTAA----TTTTGTATTTTTA  3692

Query  164  GTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------  219
            |||||||.||||||||.|||||||||.|||||||||||||||||||||||||||||                  
Sbjct 3693  GTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCACCTCGGC  3766

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3767  CTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTGGATAAA  3840

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3841  GTTTGGTGTTTTTACAGAGGAGAAGCAATGGGTCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCTTTTTTG  3914

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3915  TACAATATGTTGTTTACCTGAAAGGAAGGTTTCTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTCTGTGG  3988

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3989  AACTTAAAACCTTGAAGGTCTGTCATAGGACTCTGGACAATCTCACACCTTAGCTATTCCCAGGGAACCCCAGG  4062

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4063  GGGCAACTGACATTGCTCCAAGATGTTCTCCTGATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACAGGTGGC  4136

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4137  TGTTTCTTGTCTGTTATGTCAGAGGAACAGTCCTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCTAATAAA  4210

Query  220  -------------------  219
                               
Sbjct 4211  CTTTGTGCTGATCTGGAAA  4229

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.