Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_001750200.2
- Aligned Length:
- 6385
- Identities:
- 191
- Gaps:
- 6168
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGCGCGTCCGCGGCCCGGCCGCAGCCCCAGGCCGCCGAGGGAGCGGCGGGGCCGGCGCCATGGCCGAGCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCCTCGGCCTCCCCGGCGCGCCCGGCGCGCTCAACACGCCCGTGCCCATGAACCTGTTCGCCACCTGGGAGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGACGGCTCCAGCCCCAGCTGCGTGCCCAGGTTGTGCAGCCTGACTCTGAAGAAGCTGGTGGTCTTCAAGGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGAGAAGGAGCTGATCTCCGTGGTGATCGCTGTCAAGATGCAGGGCTCCAAACGAATCCTGCGGTCCCATGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTGTGCTGCCCCCCAGTGGACAAGTGGAGACAGACCTGGCCCTGACCTTCTCCTTGCAGTATCCTCACTTCTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGAGGGAAGGCAACAAGCTTCAGATCATGCTGCAGCGCAGAAAGCGCTACAAGAACAGAACCATCCTGGGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACAAGACGCTGGCCGCGGGCTCCATCAGCATGGCTGAGGTGATGCAACACCCGTCTGAAGGTGGCCAGGTGCTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCCTCTGCAGCAGCATCAAGGAGGCCCCCGTCAAGGCGGCCGAGATCTGGATCGCCTCCCTGTCCAGCCAGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CATTGACCACGAAGACAGCACCATGCAGGCCGGCCCCAAGGCCAAGTCCACGGATAACTACTCCGAGGAGGAGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGAGAGCTTCTCCTCCGAGCAGGAGGCCAGTGACGACGCCGTGCAGGGGCAGGACTTGGACGAGGACGACTTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GACGTGGGGAAGCCGAAGAAGCAGCGGAGATCGATTGTAAGAACGACGTCCATGACCAGGCAACAGAACTTCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCAGAAAGTGGTAGCGCTGCTGCGGAGGTTCAAAGTGTCCGACGAGGTCCTGGACTCGGAGCAGGACCCTGCGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCACATCCCCGAGGCAGAGGAGGACCTGGACCTCCTGTATGACACCCTGGACATGGAGCACCCCAGCGACAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGCCCCGACATGGAGGATGACGACAGCGTCCTCAGCACCCCCAAGCCGAAGCTGCGGCCATACTTTGAAGGCCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTCGCACTCGAGCTCGCAGACGGAGATTGGGAGCATCCACAGCGCCCGCAGCCACAAGGAGCCCCCAAGCCCGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTGACGTGCCCGAGAAGACGCGGTCCCTGGGAGGCAGGCAGCCGAGCGACAGTGTCTCTGACACGGTGGCCCTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGGTGTGCCAGGCCCGAGGGAGCACCCTGGACAGCCTGAGGACAGCCCCGAGGCTGAGGCCTCCACCCTGGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGTGTTCACGGAGAGGCTGCCGCCCAGCGGGAGGATCACCAAGACAGAGTCCCTTGTCATCCCCTCCACCAGGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCGAGGGGAAGCAGGCTGGCCGACGGGGCCGGAGCACATCCTTGAAGGAGCGGCAGGCAGCACGGCCCCAGAAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAGCGGGCCAACAGCCTGGACAACGAGCGCTGCCCGGACGCCCGGAGCCAGCTACAGGTGCAGCTGCAGATCCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGGAAGACTGTGTATGACCAGCTCAACCACATCCTCATCTCCGATGACCAGCTTCCCGAAAACATCATCCTTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCAACACCTCGGACTGGCAGGGGCAGTTCCTCTCCGACGTCCTGCAGAGGCACACGCTCCCCGTGGTGTGCACG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGCTCTCCTGCGGACGTCCAGGCGGCCTTCAGCACCATCGTCTCACGGATACAGAGATACTGCAACTGCAATTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCAGCCCCCGACCCCCGTGAAGATCGCCGTGGCGGGAGCGCAGCATTACCTCAGTGCCATCCTGCGGCTCTTTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGGAGCAGCTGTCCCACAAGACACCCGACTGGCTCGGCTACATGCGCTTCCTGGTCATCCCACTGGGCTCCCAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCGTGGCCAGGTACCTAGGCTCCGTGGACTACCGCTACAACAACTTCTTCCAGGACCTGGCCTGGAGAGACCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTTCAACAAGCTGGAGGCCCAGAGTGCGGTACAGGACACGCCAGACATTGTGTCACGCATCACGCAGTACATCG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAGGGGCCAACTGTGCCCACCAGCTCCCCATCGCAGAGGCCATGCTGACCTACAAGCAGAAGAGGAAAAAGCAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTTCATTTTGACTTTACCCTAAGCCCTGACGAAGAGTCCTCCCAAAAGTTCATTCCCTTTGTCGGGGTTGTGAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGTTGGAATTGTGGAGCCATCCTCGGCCACATCAGGCCACTGGGGACTCCCACCCTGCCCACCCCCAGGAGCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCTGGCCTGGCCACATCCTGGTCCGGAGGGCCTGGTGGCACCCGGGCAGAGCAGCAGGTGGGCTCAGCCTGCCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGTGACTCCTCCCCAAAGGCGACTCGGACGACGCGGCCCCCTCGGGCTCTGGCACGCTCTCCTCCACCCCGCCG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCCGCATCTCCTGCGGCCAAGGAGGCCTCACCCACCCCGCCCTCCTCCCCGTCGGTGAGCGGAGGCCTGTCCTC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCCCAGCCAGGGTGTCGGCGCCGAGCTGATGGGGCTGCAGGTGGACTACTGGACGGCAGCACAGCCTGCGGACA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGAAGAGGGACGCCGAGAAGAAGGACCTGCCTGTCACCAAAAACACGCTCAAGTGCACTTTCCGGTCCCTCCAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTCAGCAGGCTGCCCAGCAGCGGCGAGGCTGCAGCCACGCCCACCATGTCCATGACCGTGGTCACCAAGGAGAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAACAAGAAGGTGATGTTTCTGCCCAAGAAAGCGAAGGACAAGGACGTGGAGTCTAAGAGCCAGTGCATTGAGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCATCAGCCGGCTCATCTGCACTGCCAGGCAGCAGCAGAACATGCTGCGGGTCCTCATCGACGGCGTGGAGTGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCGACGTCAAGTTCTTCCAGCTGGCCGCGCAGTGGTCCTCGCACGTGAAGCACTTCCCCATCTGCATCTTCGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACACTCCAAGGCCACCTTCTAGCCCCACCCACCAGGGGGCCCACCTCCTGCCCCATGCTGTGAGGGGCCCAGCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GCATTTCTGTTAACATTTCAGTTTACTACAGAGACAGACGCTTAAAACACAAAGAGAAACAGTCTTAAGTATGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATGTGCTCACAACGTGGAAACTAACGGGGGAGCTCCTGCCAGGAGCCGAATAACTGCTCTGCTTATTAACCCGA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACGTTCGGCCCGGGGCTGGGAAGCCAGAAGGACGATGCTGAGCCATGGATCGCGGAAGGCGTCCTCTGGCCTCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GGAGCCACCCAGAGCCTCACAGGCTGAGTTCTTGCCTCTGTGTCCTGTCCTTCCTGGAAGTCAGGACTCTGCTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCTCAGGGAGCCCGGGGAAGGCGGAGCTCAGTGGCCACAGGCCGAGGGCCATGGGGCCGCTCAGTCCCGTTGGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTTGTCCTGAGTTGAGCCTGGGGGGGCCGTCCTGCCCGCCTAAGAGATGCCCCCAGCACCGCACACTCGTGGTT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CCCAATAAACTCCTGCCTGCGGCGGAGGTTTTATAGCAGCAGATATTTTTAATGCTTTTCAATACATGTTCTAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGTAGCTGCCAAACATGTTGCTCTTCTGAAGTCCCCCTGGGGCTGGGCAGAGCCAGCAGAGCCTGCCCCCACTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCCCAGCCCCTGCCCCACCCCGCCTCACACCTTCCCCACTCTCAGGCTGTTCTTGAAACACCATGAGGCTTCTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CGTGTAGTCCCTGCCCCAAACTTAGCAAGCACAGGGGCCTCCACAGCCCAGGTGGCCCCAGAAAATGTTCCAGA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GCCCAGCTTGGTACATAGTGAGATGCTGCTGGGGTTGGCCTGAGGTGGGGGCCACTTCCTCCACCCCAGTGGGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 ATGTCTGAGGTCAGCCATGGGGATATCTGGGTTGAGATTCAGGTTTTGGTGAATATGGGGCAGGCGTCCAGATG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGTTTGTGTCACCTGCTGCAACGCTGTAGCCAATGAAGATTCCAGCGGGATGGCCTGACCAGCGGGGCCGGCAC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTTGGAGCCGTGGGTGCAGCCAGGTACCCCGTGCAGGGCCTGGGAGGCTCTCCAGGCCACAGTCCTCAGAGCGT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GTTGGGTCCCATGTTGTGTGTGGGTTCCATGCCCTCCACACAGCAGGAGAGGGCTTCCCTGACCACACCTGCCC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CCTCAGTCCTGCTTCTCCCCAGTAAGCCTGCACTGTGGGGTCTCCATAGGAGGAGCTGGGGAAGCTGGGGCCCT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CCCAGGGGTCCTGATCGACCCTGGGGGCTCTTGGCCTGGTTTCGTAAGATGGAGCACTGCAAAAGGCCATGCTC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AGAAAGCAAACGCAGGGCAGGGTGGGCCTCGAGCCGGGGCTGGAGGGGTCTCCACCCTTGCTGGCCTGAGAGAT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GGCCCACATTTCTTACTTGTGACCGCCCTGCTCTTCCTGGCCGCCCCCCCCAGGTGGCTGAACAGGGTGATTTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GTTGTGGTGAGGGGCCAGGATGTGGCCTGGTGTGCAGCCTCAGCTCCCTGGGTTCAGGCCTCAGAGGTAGCCTG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TGTGCAGGAGGCAGAGCCCCAGCCCCTCCCAGCCAGAGCCCCTCCACACCAGGGACTCCTCCTTCACCTGGGAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CAGGAGCCTGGGGCACACCCCAGGGTGGGGGAGAGGGTAGGAAGGTCTCCCATTGAATCCTGGCTTCAGGCTCT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GCCCCGAGAAGTGTCTGCGGTGAGGGTGTGAGCCCCGGGCTGATGGCCTCTGACCCCGGCAACAGGTGGGACCC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TGACTGACTCGTTCAGCTGCCCCCAAGCTGGGCTGCAGAGCATCTGTTTTTCTGCTCTCCAGTTTCTTTTCTTT 4736
Query 1 ---------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTC 53
|||||||||...|||||.||||||.||||||||.||||||||||||||.||||
Sbjct 4737 TTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTC 4810
Query 54 ACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCAC 126
||||||.||||.|.||| |.||| ||||||..||||||||||||.||||||.||||||||||||||||||||..
Sbjct 4811 ACTGCAGCCTCCGTCTC-CCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGT 4883
Query 127 ACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTC 200
..||.||||..||.|||| |||||||||||||||||||||||||||||||||..||||||||||||||||||||
Sbjct 4884 GTGCCACCACACCTGGCT-ATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTC 4956
Query 201 TCGAACTCCTGACCTCAAG------------------------------------------------------- 219
|.|||||||||||||||||
Sbjct 4957 TTGAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACCGC 5030
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5031 GTCCTGCCTGCTCTTCCTGTTTCTTTCCCAAGGGTCACACTCAGTAGGGAGATGAAGGTGGAAACATCCTTGCT 5104
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5105 GTGGCTTTCTGGCCTCAGAGCAGGTTTTAGAGGAAGGGGCCACAGGCTGCCTAGTGCATCCTGGCTGTGGGCAG 5178
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5179 CCCCTTTCCTGGAGCCCTCCTGCCTACCCCGTACCTCCCATCTGGCTGCACAGCTCCATCCTTAGCCACGCAAG 5252
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5253 GGGAGAACATGGGCAGAGTCTCCATCCAGCAGCTGGGGGTTCTGGTGGCACTCCCTGTGCCCCTGCTGCTGCTG 5326
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5327 GGCTGTGGGTCTGCCCTGCACCCAGGAGCCCCACGGTCCATCCCCCACACCATGCCCAGCACCAGGGAGGTTGG 5400
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5401 GCAGACAAGACCTGGGCCATGCCAGCCCTCTGTGCCTCGGTTTTCCCACTGGTTACACAGGATGGTCGCATTTT 5474
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5475 CCCTGCCTACCTCACAGAGCTGTTCTGAGGGTGCATGGAGGAGCACTCTGTCCCACCAAGGACAACTAGAAACC 5548
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5549 AAAGCCATCTGACAGCCAGTGCGGTAAGGGCGGGGGATGTGTGTGTGAGGTGTGCACACCCCCCGAGAACCTGG 5622
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5623 CCCTGGACTGGCCTCACAGGACAGGAGGCAGCCCCTTGTAGAGCTAGGGCTCAGCCCCATCAGTCTCAAAGGTT 5696
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5697 AAGCCACCAGTCACCACCGAGGCACCCCTCAGGCCTGGTGGCCACTGTCCACTATTACGTAGACAGACCCCACC 5770
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5771 CTCACCCAGGCCAGCTGTGGGCCAGTCCCGCCCTGCAATCTGGTCTGCTGCCTTCCTCTTCCATGTTGGTCCCC 5844
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5845 TTGGCCACTGTCTCTGGGCATGCAAGCCAGTGTCCTGGTTCAGTGCCTCGGCCAGAGCTGGGGCAGGAGAGGGG 5918
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5919 CCTCTGGGTGAGAGCTGGGGGTGTCTCTGCAGGGTACTGGCAGCCTTGCCACACTGTCCTCATTCCCAGATGGA 5992
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5993 AAGACCTGAGTGCCTCTCGCCTTCCTCCGGGAATGAATTCCTCATGAAAATGACCAGGCCACTTCTTCCGAGGG 6066
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6067 CCAGGCCGCCCCCTCCCCGAGACCTGTCCTGCCGTCCGCGGGTGTGTGGCCTGTAGGGGACTGAGAGCTGGGCT 6140
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6141 TGCTGGGCACCTCTGGAATCTGACCCTGTGGGCCAAAGAAGCACCACTGTAGTTTCTGCAGACCCCCATGCGGT 6214
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6215 TCATTGTGCATTGTTTGGTTTCTAGGATGTATGTGTTGCTAGTTTTTTTTAATGAAACCCTGGATTAATGTAAA 6288
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6289 TAGCTTTTTGGGGAACGGATTCTAATGTCACGTATGTGACCGTGTGGACTATTTCAAGGTGCTGATGCAACACT 6362
Query 220 --------------------- 219
Sbjct 6363 AATAAACCTGGAGGGGCCGGC 6383
