Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001752586.1
Aligned Length:
4963
Identities:
190
Gaps:
4747

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTCCTAGTGACTAGGCTACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACACT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGGC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCACCCACA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGGCTGTTGGGACCCAGAGGTCGGCGACA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCCTGAAACCCTTCCC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCACCTTTTCCATGAGGGACTCCACAGCATGGCGGGTCACC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGCAGCGGCCCCCGGACACCTCTCCCTCCTGGATGATGTCCCCTCTCTGGCTCCAGGCCTCATACTCCTCCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GCTCAAGTACTCTACAGGTGACATTGGACGGGGCCATCATAGACCAGCTGTGTGGGGGTCTGGGGGAGTCCCAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGTAAACACCCCTGTCCCCGTGAACCCTGCCAGCACTGGGAGAAGCTCTTCTTAGGATGTCCACTTTACAAACC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGACCCTGCACACCCCGCTCTGTGCCCTGCACCTCCATCCTGAACTATCTGGACACAGCAGTGCCTCCTGCCAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CCTGCCAGCACCGAGCCCCTCTTCCAGCCCACCCCAGTGGGGTCCAGGCCCCTCCCTGGAGCCTCACCTTGCGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GTCACGGTGCACTGCTGAGTCATGTCCTGGATGAGGGCTATGAGCTGCTGCTGAGCCCTGCAGAGACCAGCAGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GGCCCTGACCCAGCTGCCTCCTGCCAGGCTGGAGCGCTCCATCCTGGCGGCCATGCCAGTCTCCAGAGCTTTCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAAGACTCCAGGGCCTCGGCCCACCCCTGGAGATGCTGATTTACTTGTCCTGGGGCGGGACCCAGGGGGTGCTG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTGAGCAGCCAGCGTACAGGGCCCCACTCCAGGACCTCAATATTCATGGTGGGTCCCTGGCCTGCAGCCTGGAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCACCGAGAGAGCTGTTAGAAATGCAGAGTGCCAGGCCTCTCCCTGGACCTGCTGGCTCCGATCCCCAGGGGAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTGAGTTTGCAATGAGTGATGGGGGTGCTGAGCTCAACACTCCTGCTTTCTAGCACTGTGCGTTCCGTGCACTT  2294

Query    1  -------------------------------------------------------------------ATGGAGT  7
                                                                               |..||||
Sbjct 2295  GAAACTTGGAGCCTCCCATAGGCTGATCTAGAACAATGGTTTCCTTTTCTTTTTTTTTTTTTTTGAGACAGAGT  2368

Query    8  CTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAA  80
            ||||.||||||||||||.||||||||.|.||||...|||.||||||||||||||||||||||| ||.|| ||||
Sbjct 2369  CTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCTCAATCCCGGCTCACTGCAACCTCTGCCTC-CGGGGTTCAA  2441

Query   81  GCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTT  154
            |.||||||||||||||.||||||.||||||||||||||||||||||..||.||||.||||.||||| .||||||
Sbjct 2442  GTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAA-GTTTTTT  2514

Query  155  GTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------  219
            |||||||||.||||||..|||||||||||.|||..||||||||||||||||||||||||||| ||         
Sbjct 2515  GTATTTTTAATAGAGACAGGGTTTCACCAGGTTACCCAGGCTGGTCTCGAACTCCTGACCTC-AGATGATCCAC  2587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2588  CCGCCTCGGCCTCCCAAAGTGTTTGGATTACAGGTGTGAGCCACCATGCTCGGCCTAGAGCAGTGGTTTTCAAT  2661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2662  GGAGCAAGGCAGGGGGCAATGTCACTCCCCAGGGAGGGTGACCAGCTGTCCCTGCTTGCCCAGGACCGAGGGGC  2735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2736  TTCCCTGCAAGTGGGGCTTTCAGTGCTAAGACCAAGACAGTCCTAGGAGAACCAGGGGACCCTTGGCAACCTAT  2809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2810  AGAGACATTTCTGGTTGTCACAGCTGGGGCATGGGAGTAGTCCCGGCATCCTGGGTAGGGCGGCCAGGGATGCT  2883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2884  GCTCTATATCCTGCAGTGCCCAGGACGGCCCCACCACAGACGGGGATCCAGCCCCAAACGTCCATGGTACCAAA  2957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2958  GCTAAGAAACCCAGAGCTAAGAAACCCAGATCTAGAATGTTCTAGAATGAACATTTCATTTGCAATATATAAAG  3031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3032  CATCCATCACAAAGAAACAACATCTTCAGCAGTGATCTTGGCAGGCTTCCCTCCTTAGGGGGGTCTCACCACGC  3105

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3106  CCACCCTCTATTGCTGGGCAGGAGGAGGAAGCCGAGGCAGGCTGGGTGCCATTTCCCTGTGGGCCTCTCTGGGG  3179

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3180  ACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGATGGTGCCGTGCGCGGCAGTATCCTTCATGG  3253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3254  TGTAAGAGTTCACGCGGTGGGCATGCCAGCAGCCGCAGCCCTGGAACATGGTGTCGGTGACGTGCAGGACCTCG  3327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3328  TTGCAATGCACCTGCAGCTCCCCTTTGGCCCTGCCCTCCATGGCCAGGTTGACCCGGATGTAGAATGAGTCCCC  3401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3402  CGAGGTCGCCACTTTGGCCTCCAGGTCCTGGAGTAGCCTCTTATAACCTGATAAAAGGGGACATGAGCCACAGA  3475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3476  TGAGCCACAGATACGAGCCTCTGCGAGGAAGGTTGCAGAAAATTAAAGTAGGAGAGAAGGAAGGACCCTCCCAG  3549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3550  TCTCAGAAGCTGCTCTGGCACTGGAGTCAGTGGGTGGGAGGTTTCCAGCTGGCTTGGGGGCCTCCTGGGGACCT  3623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3624  GGGGCACAGCCTGGCTGATCCTCTCTTGGCTCTGGGGGTCCCTGGCTGCTGGGCGTGCAGAAGAACCACCAGGG  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  ACTTAAGGGTCATGGAGTCTGGCCAGGCAGCTGTGCACACGAGAGGAGTGGTATGTGTACCGTCCGTGTTGACC  3771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3772  TTCACAGACAGGCAGCAGAAGCCGTCCACCCTCCTGAGAAGCCCCACGGCCTCCTCCAGGGTCGTGTCCTCCAG  3845

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3846  GACTGCCTTGAACAAGGGCTCTGAGGCTTCGTAATCAACCTGAGGGCAAGTCGAGAAGGTCAGTCTCTTTCCCC  3919

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3920  CGGGACTCTGAATCCAGCCAGAAGACAGAAGGCGCTGAGGGCACTGAGGCGAGGCGCGGGCCAGCCCTGCCGTA  3993

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3994  GGACCACTGCCTGCACGCCTTGGTCAAAACAAAGCCACACACCAGAGCCTCTGTGGGGCCTTCACACCTCTAGT  4067

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4068  GATGCGTGCTACACATAGTGCTGGCCAGAGAGTCAACTGCCAACCCTTCCCCAGTCGAGATCGGGGGTTCTTTG  4141

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4142  TGATAAGCACTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAAAGAACCTCGGTTCTAGAACATTCAAGAGC  4215

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4216  ATTCTAGATAGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCTGCGGGCTATACCGGGCCCTACAGGATGCT  4289

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4290  GAGTGGCATCCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCACCCACAGCCTTCCCCACTGTGAAGGCCCA  4363

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4364  CCCCCCAGGGCTTCCACCATCCACTTCATTTCTTCTCAATATTGTTCTAAGCTTAGGAGAGTAGATATTTTTAC  4437

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4438  AATAAAAATTAAGATGTGTTTTAACACCATTAGAATCTAATTGGCCCCCTTAGGATATCGGGACTATCTCCCTG  4511

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4512  AACATCGTCAAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGATAATTGGGAACCTTAAGAGCAGGGTTCCCC  4585

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4586  AACCCCTGGGCCACATACTGGTACTGGTCCATGGTCCATCAGGACCCGGGTCACACAGCAGGAGGGGCGTGGTG  4659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4660  GGCAAGTGAGCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAGCACAGCAGTAGATTCTCAGAGGAGCATGA  4733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4734  GCCCTATCGTGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTCCTTATGAGAATCTAATTCCTGATGATCTG  4807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4808  TTACCGTCTCCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTG  4881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4882  AATTATGGTTCAGTGTATGATTCTTTCATTACATATTACAGTGTAATAATAATAGAAATAAAGTGTACAATCAA  4955

Query  220  -----  219
                 
Sbjct 4956  TGTAA  4960

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