Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001755384.1
Aligned Length:
4981
Identities:
188
Gaps:
4767

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGCCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTGTAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCCAGCTTTCACAGCCATCGCTGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCACGGGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGGTTGGCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAGGCCACC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGACACAGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGGCAGGAGAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCTTTGACC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCAGGCTCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGCGAGAACGTGAAGGCATTCTTCAGCCGCGTAGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTGCCCGGCTCCAGGTCGGCAATGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGGCCCTCCAGCCTGGGCTGCTGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAATTTCCGTGACTGTGGTGTGGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTCCAGTCCCTCCACCCACCCACCG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAAAGGCCCCCACTGGCTGCCTGGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCCAGTCCATTTGCAGGGTCATCAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGTCTATACTACTCGGCCATGGCCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCAGGATCCGTCACAGTGTTCCAGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCCCCCTGGGAGTTTTCTGTTGTCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGCCACGGATGCTCAAGGTTCCTGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTCTGGCTGAAGGGCTATCTCTGGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCAGAACAACCACTCAGGCCTTTCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACAGCTGTCCTAGGGTAACTCACTC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGTGCCCACTGCTGCCTCTCCATCC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCACCTTTAGAGGACTTCAGAGGCC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGAGCAGACAGAAATACCCCACACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTATGAACCAGCCCCACAGCCCCAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCTTCCCGTAGATGGCGAGCACCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGCTGCCCTGTAAATGTTCAGCTCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCATTCCCCCTTCAACATATTTTTTG  2220

Query    1  -------------------------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAG  36
                                                 |||||||.|||..| |||.||||||.||||||||.|.
Sbjct 2221  TAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTTGTTGCCCAGGCTGGAGTGCAA  2294

Query   37  TGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTA  109
            ||||.|.|||||||||||.||||||||||||||| |.||| |.||||||||||||||||||.||||||..||||
Sbjct 2295  TGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTC-CCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGTA  2367

Query  110  GCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCA  183
            ||||||||||||||||..|.|.||||||||.||||||    |||||||||||||||||||||||||||||.|||
Sbjct 2368  GCTGGGATTACAGGCATGCACCACCATGCCTGGCTAA----TTTTGTATTTTTAGTAGAGATGGGGTTTCTCCA  2437

Query  184  TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------------  219
            ||||||.|||||||.|||||.||||||||.||||.|                                      
Sbjct 2438  TGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGACCTGCCCACCTCGGCCTCCCGAAGTGCTGGGATTA  2511

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2512  CAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCTTTTGGGCGGCGGGATGGA  2585

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2586  GTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTCCCCTTCCGGGTTCATGCC  2659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2660  ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCCGGGCTAATTTTTTATATT  2733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2734  TTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTCGTGATCTGCCCGCCTCGG  2807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2808  CCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATGACTTTTAAAGGGGTTGTA  2881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2882  TGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCCCCCCCGCCACATTAGCTG  2955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2956  CGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGGACAGAGAGCAGGAAAGAC  3029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3030  TGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGCACAGCTAGTGTTGATGGC  3103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3104  TTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTGCCTTCCTAGGGAGCTGGC  3177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3178  GCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAGTTTTCATGTGGATGGATT  3251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3252  GTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAGCTCTTGCCAATGGTGCTG  3325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3326  CAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGACTGCGGCCCCCAGCCTGGT  3399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3400  CCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCAGGTTTGCTGGGCATAAGC  3473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3474  TTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTCCCTTGCCCCTTCGGGCCT  3547

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3548  CCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCTAGAGCTGTACTGCCTCAC  3621

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3622  GTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCTGCAATGTGCCAGCTGATT  3695

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3696  CCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGGGAGGACAGAAGAGTAAGG  3769

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3770  TCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCATCTTCTCGGTCAGAATTGC  3843

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3844  TTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTTTCCCAGCATCGGGCAGTA  3917

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3918  AGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCAGCCCCCTGCAGCCAAGGT  3991

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3992  GCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTTCCCTGTTTCCCTGGACCC  4065

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4066  TTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGAGACACGTACCTGAAGCAG  4139

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4140  GTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTCTGGCTTTCGAGGCTCCTC  4213

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4214  ACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTCACAATGCAGTCTGCAGAT  4287

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4288  GCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCTCTGTGGACACCCCCACAG  4361

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4362  CTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCCACCCATCTGTGGAACCCC  4435

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4436  AAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAGGAAGGGCCCACAGTAGGT  4509

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4510  GCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCATGTTCCCAGCAGACAGAT  4583

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4584  TGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCCTGTGCTTGGCTCTCCTTG  4657

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4658  GTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGACCCAGAGACCCTCACAGGG  4731

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4732  CATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAGCTTGGTAGGAGCCAGCCA  4805

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4806  CAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCTAGAGAGGCTCTGGGCACA  4879

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4880  GGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACAAATCACTCCAAAACTTCA  4953

Query  220  -----------------------  219
                                   
Sbjct 4954  TTGCTTAAAGCAACAAGCATGTA  4976

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