Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_001755386.1
Aligned Length:
5077
Identities:
188
Gaps:
4863

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCTCCAGGGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCGCCGGTGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCGTGTAGCCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGCGGAGCCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGCTGTGCCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGTGAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACTTCCACGGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGGTGGTTGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTACAAGGCCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGATCATCACGGCCTTTGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGGGAGAACGAGGCAGGCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGCGAGAACGTGAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCCGGCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCCTCCAGCCTGGGCTGCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTCCGTGACTGTGGTGTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGTCCCTCCACCCACCCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGGCCCCCACTGGCTGCCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGTCCATTTGCAGGGTCATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTATACTACTCGGCCATGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGATCCGTCACAGTGTTCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCCTGGGAGTTTTCTGTTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACGGATGCTCAAGGTTCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGGCTGAAGGGCTATCTCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GAACAACCACTCAGGCCTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GCTGTCCTAGGGTAACTCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCCCACTGCTGCCTCTCCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCTTTAGAGGACTTCAGAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCAGACAGAAATACCCCACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGAACCAGCCCCACAGCCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCCCGTAGATGGCGAGCACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGCCCTGTAAATGTTCAGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCAT  2294

Query    1  -----------------------------------------------------------ATGGAGTCTCATTC-  14
                                                                       |||||||.|||..| 
Sbjct 2295  TCCCCCTTCAACATATTTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCT  2368

Query   15  TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTC  87
            |||.||||||.||||||||.|.||||.|.|||||||||||.||||||||||||||| |.||| |.|||||||||
Sbjct 2369  TGTTGCCCAGGCTGGAGTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTC-CCAGGTTGAAGCGATTC  2441

Query   88  TCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTT  161
            |||||||||.||||||..||||||||||||||||||||..|.|.||||||||.||||||    |||||||||||
Sbjct 2442  TCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAA----TTTTGTATTTT  2511

Query  162  TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------  219
            ||||||||||||||||||.|||||||||.|||||||.|||||.||||||||.||||.|                
Sbjct 2512  TAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGACCTGCCCACCTCG  2585

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2586  GCCTCCCGAAGTGCTGGGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTT  2659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2660  TTCTTTTGGGCGGCGGGATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAG  2733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2734  CTTCCCCTTCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCA  2807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2808  TGCCGGGCTAATTTTTTATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGA  2881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2882  CCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATA  2955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2956  AATGACTTTTAAAGGGGTTGTATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGC  3029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3030  CCCCCCCCCGCCACATTAGCTGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAG  3103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3104  ATGGACAGAGAGCAGGAAAGACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGC  3177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3178  CTGCACAGCTAGTGTTGATGGCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAG  3251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3252  CCTGCCTTCCTAGGGAGCTGGCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGC  3325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3326  CCAGTTTTCATGTGGATGGATTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTT  3399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3400  TTAGCTCTTGCCAATGGTGCTGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCC  3473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3474  CGACTGCGGCCCCCAGCCTGGTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAG  3547

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3548  ACCAGGTTTGCTGGGCATAAGCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCC  3621

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3622  CTTCCCTTGCCCCTTCGGGCCTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTG  3695

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3696  AGCTAGAGCTGTACTGCCTCACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACC  3769

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3770  TCCTGCAATGTGCCAGCTGATTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGC  3843

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3844  CTGGGAGGACAGAAGAGTAAGGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCA  3917

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3918  GCATCTTCTCGGTCAGAATTGCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCT  3991

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3992  TCTTTCCCAGCATCGGGCAGTAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCA  4065

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4066  AGCAGCCCCCTGCAGCCAAGGTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCC  4139

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4140  TCTTCCCTGTTTCCCTGGACCCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGC  4213

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4214  TGGAGACACGTACCTGAAGCAGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTC  4287

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4288  GCTCTGGCTTTCGAGGCTCCTCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCT  4361

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4362  GGTCACAATGCAGTCTGCAGATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAG  4435

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4436  GCCTCTGTGGACACCCCCACAGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTC  4509

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4510  CCCCACCCATCTGTGGAACCCCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTG  4583

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4584  GGAGGAAGGGCCCACAGTAGGTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAG  4657

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4658  ACCATGTTCCCAGCAGACAGATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACA  4731

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4732  ATCCTGTGCTTGGCTCTCCTTGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTC  4805

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4806  TGACCCAGAGACCCTCACAGGGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGA  4879

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4880  AGAGCTTGGTAGGAGCCAGCCACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCC  4953

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4954  AGCTAGAGAGGCTCTGGGCACAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGT  5027

Query  220  ---------------------------------------------  219
                                                         
Sbjct 5028  AACAAATCACTCCAAAACTTCATTGCTTAAAGCAACAAGCATGTA  5072

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