Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002956379.1
- Aligned Length:
- 4019
- Identities:
- 192
- Gaps:
- 3804
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTATACATATATTTATTCTGCTATGTATATGTTCACATAGCAAAAAAATAAAATAAAATAAAAAGGAAAGAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATCTACTATTGTGAATGTTAAAAGCAACAAGGAGAAAAATGAACAGCAGCAATAGTGCAGTGATATTTTTCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGATTTTACGCCACGGGTGCAAGAAGATAGTATAAGATTGTATTAATTTCACATACTTATTATCCAAAATAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGTAGAGTTTCCCCGCTAAGACATACATGTGACATTTGTCCTTTGACACGTTGCAGAATTAGGGCAACAGCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAAGGTGAGCGTCTCCAGGAGCAGGTGCAGGCGCTGGGAGGCGGCTCGCGCACCAGAGGGCAGCAGCGCCCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCCAGGGCAGAGGCACCCCTGGAAGGCTCAGGAGCTCGGCTCCTGGTGAAGCCAGGACTTTAGGAATCGCATTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTCCCCACTGGCGTGAAGAGAAGTGCTAGCTCATCTATTTACATTCTAGGTTCAGAAAGGGGACCCCAAAATG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTATGTGACATCCAAGAATCCAGTTCATCTTTCAATGTTAGGCAGAAAAATGAAACCTTATTCAAATGTTAACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTAATTCTAAATACAGTATTCTGAACATTTAGATGGACCGGCTGTGGGCACTGTGGTAATTATTAGTGGGCTAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGAGAAGAGGCCCCTGTGTACAGGGCGCATCCCAGGTGACCCTAGACTTGCTGCACAGGGCCAGCCATATCTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTGAGTGGCCTTGGCCTAGTGGGCTGCCTCGGCTACCGCTTACCTACAGCTGGGGAGATGCAGACCCTCCCCTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGGTTAAAGAGAGGAGTCCGGCTGCCTCCCCTCCATGAAAGTGGTTTTCTCAGTATCTCTCCCCCTTCTTACAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGTGTGTTTGTGATTACTGCGTGCACATGGACACACGGCCACCCGCTGAAGAGCATCCCAGACTTTCTTTCACC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGGCTGTAACCATGTGACTAAGTGAAGGCTCCCACCTTGGGAGCAGAAATGATTTCCACAGCTTTCCAGTTGTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCTTTAAGGCCACCTGCTTCCCGCATCCTGCTTCTTGTTGTCTAGAATGGAAATGGGCTGGAAGGAGGTACAAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTCCCTTGTGCTGAGGACAGCCTCGAGGTGAGGAGAACAGCACTCTGCCCATCATTCCTGACTGTCCACCTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GACTCTCAATGAAGAGAGGAATCAGCCAAGAAGTAGAAAATAAATCGTTCCTGCCTTAGCTCTTATATGGATTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACCTAAATAAGGCATCAGGAATATCATGCTATTGGCAAATGCAACACAAGGAAGAAGATTGCAGCTGTGCATAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGAGTCATAAGCATGAAATCAGGTCACAGCAAACCACCCTGAGCTCTGCAAACACACCAGAGCGAGGGGCCTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTCCGAATGCTGCAGCCTCTTTATTCTGTGAGATCACAAAGACTGAGTGCATCAGATTCTCAGAGCAGCCAGCG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAATGTAGAATGCAGACCACCCCAAGCTCTGCAAACATGCCAGAGCGAGGGTGGCCTTCATCCGAATGCTGCAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCTCTTTATTCCGTGAAATCCCTGAGCACAAAGACCATGAACATGTCAGGTTCTCCACACAGCAGCCAGCAGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTAGAATGCATCAGGGCAGCTGTGCTGTGAGGCTGCAATGACTCAAATCATCTAATGGTCTGCACCTGAAAAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCGAAATGGGAATGAATGTTTGGAACATAACTTATTGGAAAGGCGGAAAGTATGTACAAAGAAATTCTCACATG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTCAGGTTAACTTTAATAGGAAAATATGCCCCACCTTCAGGGAAATAGATGTTAGGGGCTGGATGGTGTCCCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTAAAATTCATATGTCAAAGTCCCAACCCTCAGTATCTCAGAAAGTTGTGATATTTAGAGACTGGGATTTTAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCGGTGATTAAGTTAAAAGGGCCTTTTCGGTGGGCTGTAATCCAATCTGACTAGTGTCCTTATAAGAAGCGTCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCTCACAGAGGAAAAGCCATTTGAGGCCTCAGGAGAAACCAACCCTGCCAACACCTTAACCAGCCTCTAAAAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTGAGAAATAAATGTGTTGTTTAAGCCACTCAGTCTGTAGTATTTTGTTAGGGCAGCCCCAGCAAACTAATGTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTAGCAGACTATAGCATGTACACTGCGTTCATTGAGACCACATTCTCTGTACACATATCTCCAGAATGCCTGTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATTTGCACACATCACCACAAGTCTTAAAAGGATTTGAAAATATTGTGTTTTTCTGGCCTCATTTAAAATCCAGT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTGTCTGTCCTGAGAAGCAAATCACGTACAGTTTGCAAGGTAATACTTAAGTACCTAAATGTTGAGATTTACAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACAGTAAGATCTCACGTATCCAGAAATAATTGAATACTTGGAGGTTCTAACACATTGCCCCTATTAATAGACAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTCTGACAAGCGCAGATAGCTGATGTCCCCACCAAACATATAGAATAATGTTTGCAATGAGTGGAGAGGAGGAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAACGGCAGACACAGTTAAGGCTCAGGAAGAGACGGCCAGAGCCTGAGAGCAAAAAGATATGGGGAGAATCAAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGGAACCACTGAAGAACAGCCCCTTCTATCTTAATGTCTCCTGAGAGTGTCAGGTTACCATGGCACCTGTTTTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATGCCCAAGACAGCAAGAAAAATGATGTAACCTAATGTACTACATTTAAGAAGAAATAAAGTATGTGGTATATT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTGGAAACATTTTTATACATCTTAGCTAAAATGTTTAAAAGGTTATTGCTTAAATAAGTCAGCTTCATTTATCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAACATTTAAATTATGCAGAGAAGCTCATCTCCCAGCTTTGGCAAATAAGCAAGATGTTTCTGTGCTAGTTTTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGCATGAATCATCTTCATAGATCACATCAGCGCATTGATCACACCAAAAGAAGTGTCTGGGTAACCACTCCTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGCTTTGATTTCTAGAGTCAAACGCTAACAGATTTGAAGGACATGAGAAAGCCTGAATACCATCCTCTCCAAAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGTGGGCCCCTCAATCTGAACCTTGAAGCTGAAATACGATTCCTACTTCATGTACAAAACACATTTTTTATTTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GCAAAGCCAAAGCCATGCTTTAAAAATACAGACTTTGAATCTTAAGACATTATTTTGCATTTTAAAGAGAGATA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TAGTTAAAGCTTACAAGAACAATATAAAGTTTCAAATAACACCATTGTCAGGTTTAAACATGTTGGTATGTTTA 3256
Query 1 ----------------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGA 34
||||||||||..|.||||.|||||.||||||||.
Sbjct 3257 CATGACAGTTCTTTCCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTTTGTCACCCAGGCTGGAGTGC 3330
Query 35 AGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGT 108
|.|||||.||||||||||||||||||||||||||||..|.|.|||||||||||||.||||||.||||||..|||
Sbjct 3331 AATGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCAAGT 3404
Query 109 AGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACC 182
||||||||||||||||||.|||.||||.|||.|||.|| ||||||||||||||||||||| ||||||||.||
Sbjct 3405 AGCTGGGATTACAGGCACCCGCCACCACGCCTGGCAAA---TTTTTGTATTTTTAGTAGAGA-GGGGTTTCGCC 3474
Query 183 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------- 219
||||||||||||||||||||.||||||||||||||||
Sbjct 3475 ATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCATCTTAGCTTCCCAAAATGCTGGGATT 3548
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3549 ACAGGTGTGAGCCACCATGCCTAGCCCATGACAGTACCTTCCTAACATGTGTTTGTATTTTTGTAACACAAGTT 3622
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3623 GCTATTTTTCTAATGTTCATATATTTACATAGCCCTTTAAAAACATGAGTTCCATGAACTTTCTATGTCATTGA 3696
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3697 AGAGAGCTGTTAAAATCTGATTCCATCACAAATTTCAGACCCCTTTAAAATAATTATCAGAAGCCAGCATAATT 3770
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3771 CCAGCTGTCCCCTAGCTAATCTGCAGCTCCTCATAACAAAAGTCTTCAGCCACACATTGCTCTTCAACCACATT 3844
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3845 AAAGAAACGGAACAAAACTTCTTTCTACATTGTCTCAGTAAAGTTGCTTTCTTTAAAAAAAAAAAAAAAGTATT 3918
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3919 CCATTTATTTAAAAAATTAAAAACATCTAACATTTTAAACTGTACAATAAACCCCAACTTCATTACGATTCATT 3992
Query 220 ----------------------- 219
Sbjct 3993 AATCAAATCTCTCTTGAGTCCAT 4015
