Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_002956407.1
Aligned Length:
4917
Identities:
183
Gaps:
4709

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAAAAACCGGGTGCCGGCAGGCGCCAGTCGCAGGTGTGCTGCTGAGGCGTGAGAATGGCGTCCCGCGGCCGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCCGGAGCATGGCGGACCCCCAGAGCTGTTTTATGACGAGACAGAAGCCCGGAAATACGTTCGCAACTCACGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATGATTGATATCCAGACCAGGATGGCTGGGCGAGCATTGGAGCTTCTTTATCTGCCAGAGAATAAGCCCTGTTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTGCTGGATATTGGCTGTGGCACTGGGCTGAGTGGAAGTTATCTGTCAGATGAAGGGCACTATTGGGTGGGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGATATCAGCCCTGCCATGCTGGATGAGGCTGTGGACCGAGAGATAGAGGGAGACCTGCTGCTGGGGGATATG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCCAGGGCATCCCATTCAAGCCAGGCACATTTGATGGTTGCATCAGCATTTCTGCTGTGCAGTGGCTCTGTAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCTAACAAGAAGTCTGAAAACCCTGCCAAGCGCCTGTACTGCTTTTTTGCTTCTCTTTTTTCTGTTCTCGTCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGGGATCCCGAGCTGTCCTGCAGCTGTACCCTGAGAACTCAGAGCAGTTGGAGCTGATCACAACCCAGGCCACA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAGGCAGGCTTCTCCGGTGGCATGGTGGTAGACTACCCTAACAGTGCCAAAGCAAAGAAATTCTACCTCTGCTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTTTTCTGGGCCTTCGACCTTTATACCAGAGGTGAGGGACACTGGGTTTGCAGGCAGGCCTGTGTCTTTTGACT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCCAGGCAGTGGGGCTCAGCCTGCAGAGCCTGCTGGGAGAACACTGGTGGGGAAGCAGGGCCCAGCCCCAGAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCAGACCCTGGAGTGCTCACATCCTCTGGAATCTGGAGGCAGAGACCTCTGCTCTGCAGGTCCCAGAAAGGCGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTCAGTTCCTTCTCGTGGGACTGGACCTCGTCCCTGTCGGAAGGGTCAGGCCTGGGTGCCTGGGCTTCTGGAGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGGGCAGATGGTTTGAGAACTCTCCAGGGTGACCTGAGTGCACTTTGGTTCCTGCAGGGGCTGAGTGAAAATCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGATGAAGTTGAACCCAGGGAGTCTGTGTTCACCAATGAGAGGTAAAGCAACTGCTGAAGCCTGCCCCGGCTGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCGGGGGCTGCCACATTTGTTAGACATGGACTTTCTCTCTGCCCTCACCCAAGCCTCTCAGGTCACATGCAGC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGGGACACCAAGGTGACGGTAGAAACATCAGGTCCCATTTGGACTGTGCCTGTTTGGGGCTAGGGGTTTGGGGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTGGATGTCTGGGTGCAGCCATGCAGCCTGGACTCCCTTTGTGAGCCCACACATGCCCCTTCCCCTTGCCACG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCTGGCAGGCTGTCTCCTTCTTTTCTGATGCTGCCCTCCACCTGCATCTGGGACCCTCTCCCTTGGGTGCTGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCTCTCCCTTCCTTCCTGCATCCTCATCTTGACTCTCCTGGGTCACTGCTGTCGGCACACAGACATGCTGCACA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATTTCTCCTTTTCTAGAAAAGTTCCTTCCTTAACCCCATAACAACAACTAACCACCCCGTTGTTGCTTCCCTTC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATAGCAGAACTCAGACCTGCCTCTTCTTCCCCTCCCACCATTCTCTCAATCCACTTCTCAGGCTGACAATTCTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTCATCACAAATTGTTCTTGTCAACTCCACCACCAATTTCCATCAAGCCACATCTGGTCACTTGTGACTTTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTCATGTCCTTAATGTGCCTGCTCGGTAGGGTCAAAGACAGCAGTGCGCTCCCTCCTTGACGCTTCCTTCACTT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGCCTTCCACCCACCATCGTGGTTTCCTCAGCCTTCCTGGCTGCTCCTCACTCCACTGCTGCTTCCTCTTCGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TGCTGGGCCCAGCCTGGATTGGATCCCTTCTCTACCTGTGGTGCTGTAAATGCCAGCCGGAAGGTCCTAATTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CAAATGTGTATCTTCAGTCTCTTGCCACCTGGGGTTTCCCAATGCCCCCTCAGTGTCTATACCTGGAGTTTCCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGGGTAGTCTCTCTCTGTTACCCAGGCTAGAGTGCAGTGGTGGAATCTTAGCTCACTGCAGCCTCGAACTCCTG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGCTCAAATGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGCATGCCACCATGCCTGGTTAAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTTTAAAGTTTTTGGTAGAGATGAGGTCTTGCCATGTTGTTCAGGCTGATCTTGAACTCCTGGCCTCAAGCAAT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCCCCTGTCTCGGCCTCCCAAAGTTCTGGGATGACTGATGTGAGCCACCATGCCTGGCCATCCTCCATTCTTTT  2294

Query    1  -----------ATGGAGTCTCATTCTGT-CGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACC  62
                       |||||||||||.|||.| |.|||||.||||||||..|||||.|||||||||||||||||||||
Sbjct 2295  TTTTTTTTGAGATGGAGTCTCACTCTTTCCCCCCAGGCTGGAGTGCGGTGGCTTGATCTCGGCTCACTGCAACC  2368

Query   63  TCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCA  135
            |||||||| |.||| ||.||||||||||.|||.||.||||||.||||||||||||||.|||||.|.|       
Sbjct 2369  TCTGCCTC-CCAGGTTCCAGCGATTCTCTTGCGTCAGCCTCCCGAGTAGCTGGGATTGCAGGCGCCC-------  2434

Query  136  TGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC  209
             ||||..||||  ||||||||.|||||||||||||..|||||||||||||||||||||||||.||||.||||||
Sbjct 2435  -GCCCAACTAA--TTTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGTTCTCAAACTCC  2505

Query  210  TGACCTCAAG----------------------------------------------------------------  219
            |||||||..|                                                                
Sbjct 2506  TGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTCA  2579

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2580  TCCTCCATTCTTTACCATTCTTGATCATTCCTGTCTTTCCCTACATTTCACATCTTGTCAGCCTGTCATTGAGC  2653

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2654  CCTGCTGTCCGTCCCTCAGTGTGTATCCCCGTGCTGACCCTCCCTGCTTCCAACGAGCCTAATCCAGCACTGCC  2727

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2728  CCTAGCCTGGATTGCTGAACAGCTGCCTGTGTTGTCTCCTTGCCTTTGCAGTCTTTGCCTCTTTCAGATTATTT  2801

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2802  TCTGCATAGCAGCAAGACTGGTCTTTTTCTTTTTTTCTAAAATGTAAGTTGTATCTTGTCATTGCTCTTTTAGT  2875

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2876  GCCTTCATTGCAGTTGTGCTCCCCGCTCATGTTGATTTTCCTTAACACCCTTCACTGCTCTAAGTCATACACAT  2949

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2950  ACCAGTTGACTTGGTTATTATTTGTATCTCCAGCTAGAGTGAAAACTTGGTGAGGACTGGTATTATATCCCTGA  3023

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3024  CATTAAAAATAGTGTCTTGTTAGTAAAAAGTGCTCAGTATTTTTCTGAATGAATAATTGATTATAAGGTAGTGA  3097

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3098  AGAGGGAGGTTATATCTGAGGTCCAGTTGACATGAGGGAAAGGTCTTAAGACCTTTAAGACATTTAAGAGGAAA  3171

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3172  AATGAGCCCAAAATGCATGTGTTTGGAAGGCCCACAGCTGGGCACAGCCATGCATGTTCCTCACGTCCACCATA  3245

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3246  GGTTTATGCTGCCTGACCCCTTGGGTCTTTGCTCATTTCCCTTAGTTTCCCTAGTCCATTCCCCATGGGGAGCT  3319

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3320  GGGACCCTTCTGGATGACCTCTTCTCTGAGGCGCCCATCTCGTGCTCCCAGGGAGCACTCCCATCTCCTCCCTC  3393

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3394  CCAGGGGAAGTACACATTGCCTTATCTCCATGTGTCTTAGGATCCTTCTTGTCCTTACACTGGTGTCTTCAAAC  3467

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3468  GACATGTCCTAAAAGTAAATGTGGGTAAGTTGAATGACCTGAGCATCCATTCCTCAGCTATTCAAAAAGTAGGG  3541

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3542  GTAGTGCCACCTATCTTGGCAGTGTGTTGAGGGTGCCCAGCACGTACCTTGCCATCCCTCGTTCTGTAGGCTCT  3615

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3616  CACTTCCAGTTCCTCAGATGAGGTACAGGGCAGGGAGGAGCTTCTCCCGTTACTGTCATCTCAGTCTAACCACA  3689

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3690  TTCAGGACACTTGTTTATTTTAAATAAACAGGTGAATTAAGAAAAAGTTTTTTAAGTCTTTACCTAATCAGTCT  3763

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3764  CCAGGCTCTCTTTTTGGCCTGTTCCTCCCTTCCTCCTGGCCGCCTCCCTCCCATGCCTCTCATGTGCCTCCTGC  3837

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3838  AGGGCTGGGCCCCCACTTCTCTTGGGACCTGTGCTTTGGGGCACTCCCCGTCTTCACCTCCTTCCTTTAGCTCC  3911

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3912  ATTGATGACTTTCCCCCTTGCTGCTTCTCCCATGGCTCACCTCTTGCCCCCTGGTTCGCCACTCTGCCCTCACT  3985

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3986  TTGTACTCTTTGTAGAATCTTGAGATGACTCCTCCTGTGTCCCCAGCCCTGCTCTGCAGCTGCTCCTGCTTTGT  4059

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4060  GCTGGCTCATCAGGCTCAGGCATCCGAATGGCAGCTCCTTGGCTTGCCCTGTCTCTGGTTTCTACGGATGGTCA  4133

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4134  CAGGGGTCTTCGGGGTTACCCCGCCCTCTTTCCTTCTTCCCTCATACCCCTCAGTCCTTCCTTTTCAGACCCTC  4207

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4208  CTTTCCATCCCTGTCTTCCTGCCCCCAAGCTGTGGGACCCTAAGCTCCTGCTGTGAACTGTCGACTGTGCTCTT  4281

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4282  GAAGTCTAGGTGATGATGTGTCATTGCATTGGTAGAAAGCGGCCTGCTTACTGCTGCTTAGCTGCTTCCCGAAG  4355

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4356  AGGGAACAGACTGCTCGCTGGTGTTTAGGTCTCCATGCCCGGCCCAGCTCTCTCCTCCTCTGCCCACCCAACAA  4429

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4430  CCTCTGTGGCCCGGATGGATGTTATCAGGAAGGAGGGTGTCCAGAGCGGGGAATTGTGTTATAGGGAAGGTGGA  4503

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4504  GCATTTGAGAGAAGGGGCATCCGAGGCCACCAGACTCGGAGGTAAGCTTGCCATGGATTCACATGGGGGCCAGT  4577

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4578  CGGGCAGCCCCATCCATCAGCTGTCCATCAGCTCATAGCTGTGTCTCCGCCACAGGTTCCCATTAAGGATGTCG  4651

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4652  AGGCGGGGAATGGTGAGGAAGAGTCGGGCATGGGTGCTGGAGAAGAAGGAGCGGCACAGGCGCCAGGGCAGGGA  4725

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4726  AGTCAGACCTGACACCCAGTACACCGGCCGCAAGCGCAAGCCCCGCTTCTAAGTCACCACGCGGTTCTGGAAAG  4799

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4800  GCACTTGCCTCTGCACTTTTCTATATTGTTCAGCTGACAAAGTAGTATTTTAGAAAAGTTCTAAAGTTATAAAA  4873

Query  220  ---------------------------------  219
                                             
Sbjct 4874  ATGTTTTCTGCAGTAAAAAAAAAGTTCTCTGGG  4906

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