Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002956669.1
- Aligned Length:
- 5557
- Identities:
- 188
- Gaps:
- 5341
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AACTCTTGGCCTCAAGTGATTCTCCAGCCTTGGCCTCCTAAGGTACTAGGAGGCATGAGCCACCACAACTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATAGAGATCTTTTTGTTCTCCAATTTTGCCATGCTAATTAATAGAGATACTAGGTGTGGTGGACTAAATGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCAAAAAGACATGGCCTAATCCCCAGAACCCATTACTATTCCCATATATAGTAACAGACTGAATATTACCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAGGGCAAAATATGTAGTTAAGAATTTTAAGGGCCAGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGTAGAGGTGGGTGAATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTGGCCAACATGGCGAAACCCCATCTCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAAATATACAAAAATTAGCCAGGTGTGGTGGCCTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATCTCAAAAAAAAAAAATTGAGAGGAGTGTTATCCTAGATTTTCCAGGTGAGCTCTAAATCCAGTAACAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTCTGTACAAGAATGAGGCAAAGAAAGATAACACAGATAGGAGGAAGCAATGCCACCATGACGACACAGACTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAATGACACCGTTAACAGCTGAGGATGCCAAGAACCACCAGAAACTGGACGAGGCAAAAACAGATTCTCCTCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCTCTAGAGAGAGTATAGCCCTGCTGACACCTTGATTTTCTTCTGACCTCCAGCACTGTGAAAGAATAAAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTGTTGTTTAAGCCACCCAGTTTACAGTAATTTGTTGTAGCAGTCATATTTTAAGAAGAAAACTGGGGGAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAATTTGGTGTAAGGAAATGTTATAGGAAATCTAGGTCCACCTGCCTGGTTATGGTGACAAAGGGTGAATACTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTAAGTTAGCAACATCAGAAACATCTTTAAAGTCTTTTTCTACATGAATTTCCTTATTGGTTGCAGTGATTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAAATATGTCCACAAATTATTTAATTATACCCCCTCCAAAAGTTGGAGCCTAATTCTCCTCCCTTTGAGTATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATTATATTTATTGGCTTACTTCTAACAATACAATGTGGCAGAAGTGACCGTTTGTGACTTCCAAAATTAGGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATAAAAGACTTTGTGGCTTTCTCCTTGTTCTTTGACTTAGATTATTCGCTCTGGGAGAAGCCAGCTGTTGTGTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATAAGGATACTCAAGCTGCACTATGCAATGTCCACATGGCAAAAACTCAGTCCTCTTGCCAACAGGAAACCCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAACTTGGGCTATCTGAGCACAGTCAGCCTTAAAATGACTGTAGTTCGGGGCCGGCCTTCAAGCGTCAGCAACG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAAGACGGCAGCCACCATGGGCTCGGGAGTAAAAGTCCCTCACAATTTCTGACTGTTGGAAGAACTCAGAGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGAGGTCTAGAAGATGATGAAGACATGACAAAAGATGGACAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACCTAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TACCCACTAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATGTAAATGGAGTTAATAGTTCTAATGGAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTCAGTGCCTATTGATGTCTAAAGAAAATATGAAACTCCCTCAGCCACCGGCAGGACAGTGTTACAGCAATTAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCAAAAAGAAAAACCACAGGCCCTTCCGCTTCCCCCCGCCCGATTCGATTTAAGCAGTCTTCGTTTTCCACAGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGTAAATTTTCTAGATACATCATGTAGACCTCAAAGTACTGGAAAGGAAGCTCCAATTCAAAGGAAATTTATCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAGATACTGTAAATGATACTAATTATCCATTTGAAATATATAAGTTTTGCTATAACAAATCATCCTATCAAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTAACCACTGTCCACGTAGTTGAACTTCTGGAATCGAGAAATTCTAATTAAATTGATTCCCATCATAACTAGTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGGCATATCTAACTCAACTGTGAAAAGAAACATCACACAATCACCTTGCTGATTACATGGCCTGGGGGTCTCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCTTCTCCCCTTACCCTCCTGCCTCCCACCCTCCCTGCAACAGCCCTCTAGCTTGGCTTGTTAGAGTGGATGTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAGGTTTCAGGTTGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCACCTGCACCCCTGGTTTCTTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGTCTTATGCACCTTCCAATCCGTCATCCTGTCCCCACACTCCTCCACTCCTGCCTTTGGCAGAAGCATAGGTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTAACCCCTCCGCTCCCCTCTAAGATTGGCCTTTGGTAAGGAATTCAGGGCTTTCCCAGTATCTTCTCTCCCCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACCTTTATCGAGGGATGCTGTTTTTTCTTCCCTCCTCAAGTTGCTTTCTGCACCATCACCACTCAATACCTTCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGACACTTCCTTGCTTTGGGCAGAAGCCATCAGGTAAGGTTAGAAAGTCTCTAACCTCCCTTGTTTAGTTTTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAACCATACTTATTCATTCTCCATCAGCCTGGGAAATGAATATTGGGTTTTCAGCCCTGCCACCCTCTGCTGTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCAGCTGATGCGTTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGGAAAGTCACCAGGGTTACTCAGACCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCAGCTCTCGGAGTCCTTGGTGGTTGAAATTGGAGAAAGACCACAAGAAGACACTTGTAAGCACACGTGATCCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCTGAATTGTTTTACTTCCTGTAATTGCTTTTGCTTTTAAAAACTGAAGAAGTTTTAAACAGGGCTTTCATTTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTCATCCTTGCAATCCATTGAGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCAGTGCG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGCCTTGGTTTTGGTGCTGCTGCTGCTTCTCAAGATCCTCAGCAGGGATTAAGAAAGAACCCAGTGTGCATAGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGATCCCTGAAATTGGCGGGCTTGACCTCCTGGGAAATTGGTGCGTCTTTCCACTTTCTGTTCAGGACCATTAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATGCTGAAATGTGGATGCATACCGAAATAAAAGTAATTCATTGTGTAAAAAAATAAAATAACTCTAGTTCAGGA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGACATCTTGACTGCAACCTCATGAGAGACCCTGAGCCAGAACCCCCTAGGTAAGCTGCTCTTAAATTCCTGAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCACAGCAGAAATTATGAGATAATATTTAGTGCTTTAATCTACCAGATTTTGAGGTAATTCCCCCCCTTTTTTT 3404
Query 1 ---------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCT 52
|||||||.|..||| |.||.|||||.|||||.||.|.||||.|||||||.|||
Sbjct 3405 TTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGTTCTTCTCACCCAGGCTGGAATGCAATGGCGTGATCTCAGCT 3478
Query 53 CACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCAC 126
||||||||||||||||||.||.|.||||||.|||||||||||||.||||||.|||||||||||||||||||..|
Sbjct 3479 CACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTCC 3552
Query 127 ACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTC 200
.|.|.|||||||.|.||||| |||||.|||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 3553 CCACCACCATGCTCAGCTAA---TTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTC 3623
Query 201 TCGAACTCCTGACCTCAAG------------------------------------------------------- 219
||||||||||||.||||.|
Sbjct 3624 TCGAACTCCTGAGCTCAGGTAATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGC 3697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3698 ACCTGTCCTTGAGGTAATTCTTAACACAAATAACTAATACACTGATGCACCTTCTAAATAAAGTGCCATTTTTG 3771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3772 TTCAGGAGGCCTTAGCATAACAAATATCACAATCCTATGAATCTCTAGAAGTTGTCATGTACTAGATGATTACT 3845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3846 GACATCAACACAAGTTATAATACCTTAAGAATGATACCATTCATTCAGTACTTCATATGTATATGAATTTTACC 3919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3920 AGCACAGAAACTTAGCCTAGGAATCTGTCTAGTTCTCCTATTATTAACATCATACATGAGTATGGTACATTTGT 3993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3994 AATGATCAATGAGCAAATATCAATCCATTATTACTAACTAAATTCATACTTTATTCAAATTTCCTTACTTTCTC 4067
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4068 TTTATTCTCTAAAGTTCTGTGAATCCATGGTCCTATATCTGCACTAATTCACTTGTGTTTTTTCTATATACTTC 4141
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4142 TGCATCTAAAATACTATTTTTACTAGATTTTTTACCAGACTAATTTCATTGAATGTCTTCCAAAGTATGAACAC 4215
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4216 TTTTATTTTAAAGTTTTCTTAATATCCTCATGGTAACATCAAAATTTAAGGAAATCTGCTTGTCATCAAAAAGG 4289
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4290 GTTTTGGTAATGCTTTGTTAGATTTGCAAACTTTTCATATTATTTGCTCTTACATCACTTCCATGCTATTTCCT 4363
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4364 TTGCTTTTAGTGTATTAATTTTGTTCAAAATGGTAAAATAAAAGAAATATTTATACATTATATTTTTAAGTATC 4437
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4438 TATTTCCTTAATCTAAGGTAAACTTTTCTCAAGGCATTTTAACTTAACAGGATATTACATAGAAAAAAATAGGG 4511
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4512 GAATAATATCTGACACACTTCAAATGTTCTTTGAACTTTGTTAGTTTAGTGTCAGTTATTGACTGCTTGAATTG 4585
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4586 GAGAACCCCCTGCTCATATCAGTAACAGCTAGTCAAAATTATCAAGAACATTAAGAACACATCACAGAAATCAC 4659
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4660 TGTCATCAGTTATAGATAGAAAGGAAGATTGCACAGTGAGATGATGTATTCAATAGAAGGTTGTGTGTAGTAAA 4733
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4734 AATAAGAATTGTAAATGTAAGTCAACAGTAAATCCAAAAGCCATGTCTTTCCAGGGAAATCTAAAAACTATGTT 4807
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4808 TCCTACTTTCAAAATCCTTTCATCATTACAAGAGTTATTCTTTTCTGGTTCAAAAATCTTGCCTACCTCCTTTT 4881
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4882 AAAAGTTATTCTTTAAAACATTAGGCCAGATGAGCTAATTTCAGACAGCTTATTTACCTGCTCATGGATTTATA 4955
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4956 TGCCACCTGCTTTTGCTTTTTCTACAGATGCAAAGTCAACCTCTGGGGCAAAATTCCACCTTTCTCTTTCTGCC 5029
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5030 ACACAAGTGGTAAATAACATGACCCAATAAATTTTAGCATTTCCCCAAATGTGTAGGATACAAAAAATGTATTC 5103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5104 ATTCATGTGAGATATAAAAATGTACACTCACACTTCTGAAATCAACAGCCAGCCATTTCACACTTGGGCCAAAG 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 GCAAACAAACATAATTCTCACTGGCAGCTGGACAACATTCCGAGCTGCCACCACATTAATTAACTCACCTCAAT 5251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5252 CAGATTCCACTTCAACTTGCACAGCTTGCTGCCAAGAAGCCTAGCAATAAATTGTTAGGTTAAATACTGAACAA 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 GGTAGGGAAATACCATATGGTATGTTGTTATAGAGGCTGGGATATTCTTGTTTAACACTAGTAGCAGGGTTTTC 5399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5400 CATTTACTTTTTATTGTCTCTTGTGATTTGAGAAAAATGAGTATATGCTCTTGTTGATAAATGAACTTGCATGT 5473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5474 CTTATTGTGAAGGGGAATGGGATGGTAACAAGTTAACAAAACACCTTTGTCCACAAGCTTCTATAGTTGATATT 5547
Query 220 ------- 219
Sbjct 5548 CCCTAAA 5554
