Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002957208.1
- Aligned Length:
- 5262
- Identities:
- 188
- Gaps:
- 5046
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGCTGCTGGAATTCACCATCAGGGATCTGCAAAGACTTGGAGAACTTCAATCTGAATTGGCAGGAGTAGCTGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTCTCTGCCACCTATCTTCGCTGTCAACTACTTCTCATCAAGGCCTTGCAGGAAAAGTTGTGGAATGTAGCTGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGATTATGGAAGAGACCTACAAAATGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAAAGCTTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAACTTATAGTAACAGCACGAACTACACGAGGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCCCCGACTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGCATCTCCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATCGAGCCAGCGGGCGAGTCAGACAACCCTTTGCGGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAACACTGTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGGTCCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATTCACCCCAAGCCTGCAGACTTCCGGAATCCTGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCCAGGGCGGCACCGGCTCATCACTCAGGTTTATCTCTCCCACACCGCTTGGACAGGATGTGCCATGAAGCTGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGCCAGGTGGAATTGTACCACAGCCCTGACATGAACACCTGATGGCAGCTGCTGGGTTGGAGCCTAGACAAAAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATGAAGAACCATGGCTGCTGCCTGAGCCCATCGTGCTGTAATTATAGAAAACCTTCTAAGGGAAGAATATGCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GATATTTTTCAGATAAGTACCCCTTTTATAAAAATCCTCCAAGTTAGCCCTCATTTTCCATGTAAGGAAACAGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGCTTTGAGATAATGTCTGTCTCCTAAGGGACAAAGCCAGGACTTGATCCTGTCTTAAAAATGCAAAATGTAGT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ACTTCTTCCATCAAAGGTAGACATGCACTAAGGGACAGGTTTTGGCTTGGTATCAGAATACATTTTTAAAAGCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTGTAAGAATTGAACGGGCTGTACTAGGGGGTATAGAATTCTCCAGGCTAGATGAGTTTGGGCAGAGGTTGAAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAGCTCCTGACAAATTTGTTGCTAAGCAATTCAAGTATCGTATCGGGGTTGGGCTCAACTTTTTAAATTGCTTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TACCCTGAATTTTCACGTTCTGGGGAACATGAGAATTTTAGTTTTTCTCTATCTGATTCTGTACTTTTTCACTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAGTGAAAAAAAAAAAAAGACCTTTTTATAAAGGTTTCGAAGGGGGCATAAAGAGCACTCCAGTGTGGCACCTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CATTTACAAATGAATACGCAGGCCCAGAGAGACTGAGTTAGTGGTGAAGCTAAGCCTGGAACCCAGGCCTCTGG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTTCTTCCCCAGGTGACTTTCATCACAGGGGTCTGTTCTTAGTGAGTGGTCTAGCATGCACCCAGCAGTCAGAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCAGAAACCTGTTTGGCACGTTGGATTCCTTCCTCATCCCTCATACAAAAGTAGCCATCAAGTCCTTTAGATTC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTCTTCCTTCATGTTTCTTAGTCCTCTTCTTATACTGTTTGTATACTGATGGAACCACCATCAGCCCTCCTTAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GTGATGAGCTGATCTGACCACACCATTCCCCTGCTCAGTCCCTTTCAGTGGATCACTGCTCATCCCAGGAAAAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTCTGAACTCCTGTCTTGAAGGCTCTTCATGGCTCTGCTTCGTTTCCAGCCTCATACTCCCTGTCCCAAACTGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CTCTGTACTCCACTTGAACAGAATTACCTGTAGTCTTTTTCTGTCACCTCTAGGCCTTTGGACCTGCTGAGCCT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GGGAATGTGCTCCTCAGACTGTCTCCTGTGGTTCTTTCCTTCCATTCTTCAGGACTGGGCCTTGTTCTAGGACA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TATCTGTGTCTCTTATGGGCTTGGAACATTTCCTCTATGTTCCCACAGCCTCCTATACTATATTCTTCACACAT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AGTATAGTATTTATTAATATGGCATTGCAGGTTCACAAATGCAAACCCCTTAAGAAAGGTAGGCAGGAAAAGTA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 AAGGAATAAAGTGGCCTAGAAGATAACAGCAATTGGAAGAATCAGAGAGCACATTCTCTGTTGGAGAAGGCGGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GCTATTCCATTCCACTCAGTTATTTTCATTTATAAGTGTGGACCTAGTGGTGTCAGTTCTTCCCATTCTTCCAA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AACAGCCAGAAATCTTCATTTTCATGAAAGTTAAAAAACCTTGGTAACTACAGTAAATATTAAAATTACTGAGA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CAAACAAAACATGTCTCCAGGCAGATTTGTGCCAATTTGCAACTTCTACATCCTCACTGTAATGTTTACACGCC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TTATTTCTTCCAACTGATCTGTACCTGGACTGTAAGAATGTCTGTGCTGTATGCCCAGCACAACTCCTGGCACA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TAACCGGGCAAGGAAAGAATGATTCTATGTCTCCAGAGCAAAGGTAGCAGTACCATGGCATGCTGCAAAAAAAG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 ATTCAGGTTTCTGAAAGGACTTTATATTTGCTTTGAGATGATTGAACTCAGCAAACACAATCATGGAGAAGAAA 4588
Query 1 --------------------------------------------------ATGGAGTCTCATTCTGTCGCCCAG 24
|||||||||...||||||.|||||
Sbjct 4589 GGTACACACCTAGCTGTGGCCAGCTTCATGTCTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAG 4662
Query 25 ACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGG 98
.||||||||.|||||||.||||||..|||||.|||..|||||||.|.|..|.||.|||||||||||||||||.|
Sbjct 4663 GCTGGAGTGCAGTGGCACGATCTCACCTCACAGCAGGCTCTGCCGCCCTGGTTCCAGCGATTCTCCTGCCTCAG 4736
Query 99 CCTCC-----GGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAG 167
||||| .||.|||||||||||||||||||..||.||||.|||.|||||| ||||||||||||||||||
Sbjct 4737 CCTCCCAAGTAGACTAGCTGGGATTACAGGCACGTGCCACCACGCCTGGCTAA---TTTTTGTATTTTTAGTAG 4807
Query 168 AGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------------- 219
||||||||||||||||||||||||||||||||||||||||.|||||||||.|
Sbjct 4808 AGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTGCTGACCTCAGGTGATCTGCCCACCTCGGCCTCC 4881
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4882 CAAAGCGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCAACTTCTTGTCTTAACCACTCAGGCTAGAAGAA 4955
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4956 ATGACCTGTGGGCAGCTTGAGGGCTGTTCTACCTACAAACTAACTCAGAGGCTTTAATGATTTAAGACAGAGGA 5029
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5030 CTAAGTATAGTTATGTGGAGAAACAGCTTCCCTTCAAGCTCTACATATTTCCATCGTTAACCATGTGCACCAGG 5103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5104 TTCCAAAGTAGGGGCTATGTATTAGCAGGTTTTCTTAAAAGTTTAATAATGTCACTGACAGATACTTCTGTCTC 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 TAAGAAGTTTACACTAAGTTCTCTTTAATTGGAGACAACTCACTTAGGAAGAATGATTACACCCACACTGAATT 5251
Query 220 -------- 219
Sbjct 5252 CAACACCC 5259
