Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002957376.1
- Aligned Length:
- 4609
- Identities:
- 186
- Gaps:
- 4398
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATTGGAGGGCGCGGGGACTGCAACCCTAATCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCCCCTTTCAGGATCAGCTGCACCAGCTTTACT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTCTGGATTGAAGACCAGAACTGGCAGGAAGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCACTTCTTGGATCAGCTGAACTATGAGTGTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATTTGCGGAAATTCTGCCGGGACATTCAGGATC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTACCCAGTTGGCTGAGATGATCTTTAACCTCCTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAATTGGAACAAGGAGAGCCAGTTCTCGAAACACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGATTTAAGGGCTATGATGGAGAAGCTGGTAAAATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCCGATATAAGATCCAGGCCAAAGGGAAGACACCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGGAAACTCTCAATGAACTGGACAAAAGGAGAAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AACTACCCTAATCGAGCTACTGCTGCCAAAGTTGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCCCATTGACCACGGGTTGGAACAGCTGGAGACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAGCTGCTGAAGGAGCTGAAGGGACTGAGTTGCCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTACGCAACGCCCAGGTCACAGAGTTGCTACAGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCATGCCCCAAACTCCCCATCGACCCCTCATCCTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTGAGACTCCAGGAAGGCAATGAGTCACTGACTGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTCCGGAAGTTCAACATTCTGACTTCAAACCAGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTGGGACTTTGGTTACCTGACTCTGGTGGAGCAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTAGGTGTGACAGAGGAACTGCACATCATCAGCTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAAAGTGAGTGAAAATGGAGGGCAAGGAGAGAGAAAGCAGCTTTGGAAGAAGGCATAAGAAGGGGATAAACAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGCCTCTTGGGACGGACACCCTCCCTGTGGTGATTATTTCCAACATGAACCAGCTCTCAATTGCCTGGGCTTCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTCTCTGGTTCAATTTGCTCAGCCCAAACCTTCAGGTAGGGGAGTGGGGCCGACAGGTCAAGGCGCGAGAGGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGGGTGTGGAAGCTTGGTGTGATAGGTTGCTTCTGAGCCAGCCTACACTGCTCCCACCCCTGCAGAACCAGCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCTTCTCCAACCCCCCCAAGGCCCCCTGGAGCTTGCTGGGCCCTGCTCTCAGTTGGCAGTTCTCCTCCTATGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGGCCGAGGCCTCAACTCAGACCAGCTGAGCATGCTGAGAAACAAGCTGTTCGGGCAGAACTGTAGGACTGAGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATCCATTATTGTCCTGGGCTGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCTGGACATGGCTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GACAAAATTCTGGAGTTGGTACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCATGGGCTTTGTGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAGTGAATCGTCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAGGGGGCATTACCTGCTCCTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCTGTGCAACCGTAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCACTGAGGAGAATAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACCTGAAAACCCACTGCGCTTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTACTACCAGGAGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAGTTAATCTCCAGGAACGGAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGACAGGTGGATGAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGGCTGGTGCCAGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCTAGAGTCTGTGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGGAGTCCACTCTGGAGCCTGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCAGAGCCAGACCAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGACCTGTATCACAGCCAGTGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACACTGAGCCAATGGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AATCTTCAGAAACTGTGTAAAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTGGCCAGAACACCG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGATGAGGTTTACGTCTCCCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCTGACTTCTAGGAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCACATTTCCTCTGTTCTTTTCATATCTCTTGCCCTTCCTACTCCTCATAGCATGATATTGTTCTCCAAGGATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGAATCAGGCATGTGTCCCTTCCAAGCTGTGTTAACTGTTCAAACTCAGGCCTGTGTGACTCCATTGGGGTGAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGGTGAAAGCATAACATGGGTACAGAGGGGACAACAATGAATCAGAACAGATGCTGAGCCATAGGTCTAAATAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GATCCTGGAGGCTGCCTGCTGTGCTGGGAGGTATAGGGGTCCTGGGGGCAGGCCAGGGCAGTTGACAGGTACTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGAGGGCTCAGGGCAGTGGCTTCTTTCCAGTATGGAAGGATTTCAACATTTTAATAGTTGGTTAGGCTAAACTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGCATACTGGCATTGGCCCTTGGTGGGGAGCACAGACACAGGATAGGACTCCATTTCTTTCTTCCATTCCTTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATGTCTAGGATAACTTGCTTTCTTCTTTCCTTTACTCCTGGCTCAAGCCCTGAATTTCTTCTTTTCCTGCAGGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTTGAGAGCTTTCTGCCTTAGCCTACCATGTGAAACTCTACCCTGAAGAAAGGGATGGATAGGAAGTAGACCTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTTTTCTTACCAGTCTCCTCCCCTACTCTGCCCCTAAGCTGGCTGTACCTGTTCCTCCCCCATAAAATGATCCT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCCAATCTAATGTGAGTGTGAAGCTTTGCACACTAGTTTATGCTACCTAGTCTCCACTTTCTCAATGCTTAGGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACAGATCACTCCTGGAGGCTGGGGATGGTAGGATTGCTGGGGATTTTTTTTTTTTTAAACAGGGTCTCACTCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GTTGCCCAGGCTAGAGTGCAATGGTGCAATCACAGCTCACTGCAGCCTCAACCTCCTGGGTTCAAGCAATCCTC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTACCTCAGCCTCCTGGGTAGCTAGCACCATGGCATGCGCCACCATGCCCTATTTTTTTTTTTTAAAGACAGGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCTTGCTATATTGCCCAGGCTGGTCTTGAACTGGGCTCAAGTGATCCTCACGCCTTGGCCTCCCAAAGTGCTGG 3848
Query 1 --------------------------------------------------------ATGGAGTCTCATTC-TGT 17
|||||||.||..|| |||
Sbjct 3849 GATTATAGGCATGAGCCACTGTGCTTGGCCAGGATTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTCTTGT 3922
Query 18 CGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCT 91
.|.||||.||||||||.|.|||..|||||||||||||||||||||||.||||..||.|.|||||.||.||||||
Sbjct 3923 TGTCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGTGACTCTCCT 3996
Query 92 GCCTCGGCCTCCGGAGTAGCTGGGATTACAG----GCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTT 161
|||||.||||||..||||||||||||||||| ||| |.|||||||||.||||| |||||||||||
Sbjct 3997 GCCTCAGCCTCCCCAGTAGCTGGGATTACAGATCTGCA----CCACCATGCCCAGCTAA----TTTTGTATTTT 4062
Query 162 TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------- 219
|||||||||.||||||||.|||||||||.|||||||||||||||||||||||||||||
Sbjct 4063 TAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCACCTCG 4136
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4137 GCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTGGATA 4210
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4211 AAGTTTGGTGTTTTTACAGAGGAGAAGCAATGGGTCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCTTTTT 4284
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4285 TGTACAATATGTTGTTTACCTGAAAGGAAGGTTTCTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTCTGT 4358
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4359 GGAACTTAAAACCTTGAAGGTCTGTCATAGGACTCTGGACAATCTCACACCTTAGCTATTCCCAGGGAACCCCA 4432
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4433 GGGGGCAACTGACATTGCTCCAAGATGTTCTCCTGATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACAGGTG 4506
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4507 GCTGTTTCTTGTCTGTTATGTCAGAGGAACAGTCCTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCTAATA 4580
Query 220 --------------------- 219
Sbjct 4581 AACTTTGTGCTGATCTGGAAA 4601
