Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_002957597.1
Aligned Length:
3555
Identities:
188
Gaps:
3341

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTGCAGGCGCTTGTGCGGGAAGGCGTCTTCCGTGCAGATGTAGACGGCTCCTGGGAAGCAAGAGTGCCTGATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCCCAGGGGACTCCAGACGGGCCTGTGACTGCCACACAAATCAAGTGCAGATGTCTCCCGCCATTTCTAACTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCTGCCCCTCACAGGTTCTTTGCCCCTCGCCTGGGGAGGGAGGAGGCTGGTGCTTTTTCTCACCCTCCCACTGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGCCACCTCCGGGGCCAGGTGACCCCTCAGGAGGAATATGGGCTGGGTCTCCACTTCTGACACCCAGGCAAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACTTCCCCTGTCCTGGGCCCTGGGCTGGAATGGCCACAGATGGGAGGCCTCTCCTGCTCCACCCTGCCCCTCCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCCCCTGTGAACCTCCGTTCCCCACTGCAGGGCAGGGAGCAAGTGGCAGCATCAGGGCAACGCCTTCTGGAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGCCCCTGAGCCCCGACACATGGCCACCCTCAAGGCCCCCACTGAGCAAGCGTTTCCTCTCTTCAAAGCTCCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCAATCTGGGCTCCATGGTGAAATTCAAAAAGCCAGCTTGAAAAGACACGTGTTGGTGAGGATGTGTAGGAGGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGACCCCTGACCCCTGTGCACTGCCGCTAGGAATGTAAAATGGTGCAGCTCGGAAAACAATCGTGGGATGATCG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AATCTTAAAAGGGAAGGCAGTTCTGACACCTGCTCCAGCACGGATGAACCTCGAAAACACAATGCCAATGCAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAGCCTGTCACGAGACCACGTGCTGTCCGGCTGCACTTGCATGGAGCTCCCAGGACAGGAAGAGTCACAGGTAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGAAAGGGGAGGCAGGCTGCTGGGGGTGGGGGCTGACTGCTCATGGGTAGGGTTTCCTTTTGGGGTGAGGGAAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGTTCTGGAATTGGATAGTGGTGACGGGCACAGAACTTTGTGCTTCTATTAAAAGCCACTGAATTTATTTATTT  962

Query    1  ---------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTC  53
                                 |  |||.||||.||||||||||||.||||||||.|||||...|||||||||||
Sbjct  963  TATTTTAATTTTTGAGAGACAA--GAGACTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTC  1034

Query   54  ACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTAC-AGGCAC  126
            |||||||||||||||||.||.|.|||||.||||||||||||||.||||.|.|||||||||||||||| ||||..
Sbjct 1035  ACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGATTACAAGGCGT  1108

Query  127  ACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTC  200
            .|||.||||.||||.|||||   |||||||||||||||||||||..|||||||||||||||||.|||||||.||
Sbjct 1109  GCGCTACCACGCCCAGCTAA---TTTTTGTATTTTTAGTAGAGACTGGGTTTCACCATGTTGGTCAGGCTGCTC  1179

Query  201  TCGAACTCCTGACCTCAAG-------------------------------------------------------  219
            |||||||||||||.|||.|                                                       
Sbjct 1180  TCGAACTCCTGACTTCATGATCCGCCTGCCTCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGGTA  1253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1254  CTGCGCCTATCAGGCCGAACTGTACACTTTTAGAGGGAATTTTATGGCATGTAAATTACATCTCAATTTAAAAA  1327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1328  ACAGGAAGGCTTAGGGGGACTGATTTGAGTAATAATAAAACTCCAGTTTCCTGCAAAACAAAAACAAAAAGACA  1401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1402  AGGCCGGCGAGCTCTCTAAGCACTGACTATGCCAGGAAGGCTGCCCAGCCAGGACCCCGTGGCCCACGGGGCGT  1475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1476  CGTCCTGTTCCTGCAGTGGCACATGCAGTTGTGGGAGAGCCAGTGCCCCCACGCCGTGTCATGCAGCCTGTTTG  1549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1550  TGAGTGTCCGCGTAACCTTTAATTCTGAGCTGATTTTGCTTTGACAGAATTTCAAACGTAAAGAAGAGTTGCAA  1623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1624  AAATGGGTCAGGAACCCCCCGCCCCATTCTGTGTCAGAACTAAGCTTCTGAGAAGCATCTGGCCCGCTTGAGGC  1697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1698  CAGGAACGTATAAATACTGCCTTGGGAGGCCACATCCCTTTTGTGGCTGGTTCCCTTCCCCACCAGTGTCCCCA  1771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1772  GCAGTGACTGTGCCCCTAGTCAGGAGCCACAGGAAGGTCGGGGCCCTGGGCTTCCTCCGTCCTGTTGGCTGGAG  1845

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1846  AGAGGCTGGGCTGGAAGGCTCGGAAGCAGGTGGAACCGGTCAAGCAGCGTGTTTTTGTTGGGGTGACGTTATGT  1919

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1920  AGGGGCTGCACAGTCATGGGGACATCGTGAAGCTGGCAGGAGGGTGGCTGTGGACAGCCCAGCGGTGGGCGGGG  1993

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1994  CCCCAGCAGGCCTGGGAGAGCCTCACGCGGCTTAAGCACGGGAGTCGGAATCACTTCAGAGCCCGCCTGCCGCT  2067

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2068  TTCTTTTCAAAATTCGGGCCTTTAGATTGGATCCAGGAAAGGAAGTCATTTCCCCAGGAAAGCACATCTGACCC  2141

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2142  CTAACCTTGCATGTGGTCACGGTGGCCGTGGGGCCCCCTCCCTTCCCCTGGCCCGCAAGGCTGGACTGTGCTGT  2215

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2216  CATCCCGCAGCAGTCACTGGGCTGGGCACAGCTGGGGGATTCAGGGAGGGTGTCCTAAGGCTTCTGTGTCCCTG  2289

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2290  GGTATCGGGGAGTGTGGGCTTCACTGAAAAGGCCAACGGGGTGGAAGCTGAGGGGGAGTCATTGCACAAATCAG  2363

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2364  ATTTGCACGAAGCCTGGCACGGAGGACGCTGGAGAATGAGGGCGGCTCCCGTCCCGTTCCTGAGCACGCTCGAG  2437

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2438  TCCCGCCTCCACCTCACAGCAGCTCTTCCGTGCGGTAAGCGGGAGACTCCCATTTTCAAGGCCAACTCCTGTCC  2511

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2512  TCCCGGCTTCTGGCTGTCTCCAGGCTCATCCCCAAGACCAGCCGCAGGGACTCAGGCACCTGACAAGAGGGTGC  2585

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2586  CCTCCCCTGGGCTGCAGGGACAAAAATGCCTGTGGCGTGAGCAGACCCCAGCTGGGCTCTCAGGAGACCCCTCA  2659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2660  CCCTCCACCCGACACGGAGGCTCAGGAGACCCCTCACCCTCCACCCAGCACTGAAGCTCAGGCAGGCACAGCAC  2733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2734  ACCCTGGGTCCTGGGGATGACGCTGACCTGAGGGTGGCAGAGGTGAGGTTCCCAGCCACACCGCTGCTGGCAGG  2807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2808  TCAGGCCCGTGAGGAGGTGGCTGGCTGGGCCTGTGGGTCCAGGGCCTGGGGTCCGGCCCTGTGTGGGAAGTGAG  2881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2882  CCTAGCAGATGTGCTCGGAGGTGCCACCGATGAAAAAATACTGCCACTCTGTTCACGTGGAGTTTAAGACAACG  2955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2956  TGGGAATCGCATGTTGACACCAGGGAATTAGTTTAAAAGTTAAGGAGCTACTGAGAAACATCTCTCCTCCTCAC  3029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3030  AGCTCACAGTTTAAAACTACGTGAACTTTTAACACCTGAGAGACCCAGGCAGGCATGCTCTGAACGCTTTAGTC  3103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3104  CAATGCAGGGAACCCTCGTTTCACAGACAGAGCGTACAGGCTCACGGGGCCGCGCCAGGAGCATACCTGGCCTG  3177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3178  GCGGCGGGGCACCCGGGGAAAGGCTGTGCTGCCCTCCCTGCGTTGCTGGCTCTGTGGACTCTGGGCTTGGCAGC  3251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3252  TGTGCGGAACGTGGGCCGGCATCGCTGTGCTCAGCCAGCGACCCCTGGGGGCCTAGCTCTGCTGAGGGCCGGCT  3325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3326  GCCTGGTGGTGGGGTTCGTACCCTCCCACCCCTCCTGCTGTCAGCTGAGCCCAGCCTCACTTCCCCCTCCCTGT  3399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3400  TCTGGAAGGAGCGAGGGCAATCAGGGTGAGAAGGAGGGAGACGCAATGGTAGGAACAGCGCAAGAGGCGGCCAC  3473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3474  TGCCCCACCTCAACGGAAAGCTGTCCCACACAAAGCAGGGGCCGCCCACCTGCCCAGACCCCACGGAAGGGGTG  3547

Query  220  ---  219
               
Sbjct 3548  GCC  3550

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