Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_002957763.1
Aligned Length:
4966
Identities:
190
Gaps:
4748

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTCTGTGGCAGCATCTGTGTGTGTATGTGAGACTGAAAGGAGGTGGGAGATGAGGAGGGGAAGGGAATCAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCAGCAGCAACAGGCTCTATTCTTCAGTTCTGCTAAAAGAAAGAGGAAGAGAGGAAGAAAAAAATAGACACTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTTTTTTTCTCACGACACACCCTGAAGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGACCTGTCTCCCCAACACAAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCTGCCAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTT  2886

Query    1  ----------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCT  52
                                  ||||||||||..|||||..|||||.||||||||.||||||..||||||.|||
Sbjct 2887  TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCT  2960

Query   53  CACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCAC  126
            ||||||||||||||||||..|.|.||||||||||||||||||||.||||.|.|||||.|||||||||||.||||
Sbjct 2961  CACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACAAGCAC  3034

Query  127  ACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCATGTTGGCC  191
            |.||.|.||.|||.||||||        ||||||||||||||||||||.| || .||||||||.||||||||.|
Sbjct 3035  ATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCATGTTGGTC  3107

Query  192  AGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------------------------  219
            ||||||||||||||||||||||||||.|                                              
Sbjct 3108  AGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAG  3181

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3182  CCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATC  3255

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3256  TTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAG  3329

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3330  AGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATC  3403

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3404  TAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGT  3477

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3478  TGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTT  3551

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3552  TCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTT  3625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3626  GTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTG  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  GGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCT  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  GCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAA  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  TTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTT  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  TTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGT  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  AGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAA  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  ATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTA  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  TTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTAT  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  TTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTT  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  TTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTT  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  TCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCT  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  CACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTA  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  CATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTG  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  TATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCC  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  TTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGT  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  ATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATC  4809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4810  CTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCC  4883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4884  ACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGAT  4957

Query  220  --------  219
                    
Sbjct 4958  ACTATAAA  4965

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