Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_002957768.1
Aligned Length:
4970
Identities:
190
Gaps:
4752

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTTGTCTGTGTTCGCTGATCGGTTCAGTAACAAATGTAGAAGGCGTGTTCTGGAACCTGCGTAGAGTCACAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCTGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTACTAGTTTTGGGACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTGGGAGGCCGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAAC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAAT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTA  2886

Query    1  --------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTC  48
                                      ||||||||||..|||||..|||||.||||||||.||||||..||||||
Sbjct 2887  CTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTC  2960

Query   49  GGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAG  122
            .|||||||||||||||||||||..|.|.||||||||||||||||||||.||||.|.|||||.|||||||||||.
Sbjct 2961  TGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACAA  3034

Query  123  GCACACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCATGTT  187
            |||||.||.|.||.|||.||||||        ||||||||||||||||||||.| || .||||||||.||||||
Sbjct 3035  GCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCATGTT  3107

Query  188  GGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------------  219
            ||.|||||||||||||||||||||||||||.|                                          
Sbjct 3108  GGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCG  3181

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3182  TGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGA  3255

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3256  GATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATT  3329

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3330  AGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAAT  3403

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3404  GATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTC  3477

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3478  TGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAA  3551

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3552  TGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTC  3625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3626  AGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTAC  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  CTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTG  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  CTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAA  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  ATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAA  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  TGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGA  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  AAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTT  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  GAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTA  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  TTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTT  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  TTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTA  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  AGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTA  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  ATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTT  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  TTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTT  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  GTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAAT  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  AGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTA  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  TCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGA  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  ATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAG  4809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4810  CATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATA  4883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4884  TGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAA  4957

Query  220  ------------  219
                        
Sbjct 4958  AGATACTATAAA  4969

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