Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002957768.1
- Aligned Length:
- 4970
- Identities:
- 190
- Gaps:
- 4752
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTTGTCTGTGTTCGCTGATCGGTTCAGTAACAAATGTAGAAGGCGTGTTCTGGAACCTGCGTAGAGTCACAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCTGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTACTAGTTTTGGGACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGGGAGGCCGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTA 2886
Query 1 --------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTC 48
||||||||||..|||||..|||||.||||||||.||||||..||||||
Sbjct 2887 CTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTC 2960
Query 49 GGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAG 122
.|||||||||||||||||||||..|.|.||||||||||||||||||||.||||.|.|||||.|||||||||||.
Sbjct 2961 TGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACAA 3034
Query 123 GCACACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCATGTT 187
|||||.||.|.||.|||.|||||| ||||||||||||||||||||.| || .||||||||.||||||
Sbjct 3035 GCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCATGTT 3107
Query 188 GGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------------ 219
||.|||||||||||||||||||||||||||.|
Sbjct 3108 GGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCG 3181
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3182 TGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGA 3255
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3256 GATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATT 3329
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3330 AGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAAT 3403
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3404 GATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTC 3477
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3478 TGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAA 3551
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3552 TGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTC 3625
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3626 AGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTAC 3699
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3700 CTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTG 3773
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3774 CTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAA 3847
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3848 ATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAA 3921
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3922 TGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGA 3995
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3996 AAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTT 4069
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4070 GAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTA 4143
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4144 TTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTT 4217
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4218 TTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTA 4291
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4292 AGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTA 4365
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4366 ATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTT 4439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4440 TTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTT 4513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4514 GTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAAT 4587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4588 AGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTA 4661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4662 TCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGA 4735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4736 ATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAG 4809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4810 CATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATA 4883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4884 TGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAA 4957
Query 220 ------------ 219
Sbjct 4958 AGATACTATAAA 4969
