Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002958057.1
- Aligned Length:
- 5560
- Identities:
- 190
- Gaps:
- 5344
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTCCTAGAGGAAAAGAATGAGGCTCAGAGAGGTGAAGTAAGCTGCTCAGGATTGCACAGCTGTGACTAGGCTAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCAGATTTGAAATCAAGTTTGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGGTAAGCGTGAAATCAGAGCAGTTGTTGTTGTTGTTGTTTTGTTTTGTTGAGACAGAGTCTCGCTCTGTCAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACCGCAACTCCACCTCCCAGTTCAAGTAATTATCATGTCTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCGCCACACCTGGCTAGTTTTTGTATTTTTAATAGAGACAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTGCTGACCTCAAGCAATCTGCCCACCCTGGCCTCCCAAAGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAAAATCAGGGGAATCTCATGAGCAATCAGCGGGGCCCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTCCCAAAGTTGTGCGGAAACGGCCCTGTCAGCGCCTCAGCTTCCTGCAAACCGCAGAGCACACTCCAGAGGCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCTGCCGTGGGCTTTGGGGGAGCCCAGGAGCCGCTTCGAAGCCCCTGCCCAGCCCCCAGCGTGCACCTACTTGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTTCTTTGCCATCTTCTCGTTGACAGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACACTGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCACAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGGCTGTTGGGACCCAGAGGTCGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCCTGAAACCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTCCCAGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCACCTTTTCCATGAGGGACTCCACAGCATGGCGGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCACCCAGCAGCGGCCCCCGGACACCTCTCCCTCCTGGATGATGTCCCCTCTCTGGCTCCAGGCCTCATACTCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCTGGCTCAAGTACTCTACAGGTGACATTGGACGGGGCCATCATAGACCAGCTGTGTGGGGGTCTGGGGGAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCCATGGTAAACACCCCTGTCCCCGTGAACCCTGCCAGCACTGGGAGAAGCTCTTCTTAGGATGTCCACTTTAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAACCTGACCCTGCACACCCCGCTCTGTGCCCTGCACCTCCATCCTGAACTATCTGGACACAGCAGTGCCTCCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCCACCCTGCCAGCACCGAGCCCCTCTTCCAGCCCACCCCAGTGGGGTCCAGGCCCCTCCCTGGAGCCTCACCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCGGGTCACGGTGCACTGCTGAGTCATGTCCTGGATGAGGGCTATGAGCTGCTGCTGAGCCCTGCAGAGACCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCAGAGGCCCTGACCCAGCTGCCTCCTGCCAGGCTGGAGCGCTCCATCCTGGCGGCCATGCCAGTCTCCAGAGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTTCAAAAGACTCCAGGGCCTCGGCCCACCCCTGGAGATGCTGATTTACTTGTCCTGGGGCGGGACCCAGGGGG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGCTGTTGAGCAGCCAGCGTACAGGGCCCCACTCCAGGACCTCAATATTCATGGTGGGTCCCTGGCCTGCAGCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGAGTCACCGAGAGAGCTGTTAGAAATGCAGAGTGCCAGGCCTCTCCCTGGACCTGCTGGCTCCGATCCCCAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGGACTTGAGTTTGCAATGAGTGATGGGGGTGCTGAGCTCAACACTCCTGCTTTCTAGCACTGTGCGTTCCGTG 2886
Query 1 ------------------------------------------------------------------------AT 2
|.
Sbjct 2887 CACTTGAAACTTGGAGCCTCCCATAGGCTGATCTAGAACAATGGTTTCCTTTTCTTTTTTTTTTTTTTTGAGAC 2960
Query 3 GGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG 76
.||||||||.||||||||||||.||||||||.|.||||...|||.||||||||||||||||||||||| ||.||
Sbjct 2961 AGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCTCAATCCCGGCTCACTGCAACCTCTGCCTC-CGGGG 3033
Query 77 -TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTT 149
|||||.||||||||||||||.||||||.||||||||||||||||||||||..||.||||.||||.||||| .|
Sbjct 3034 TTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAA-GT 3106
Query 150 TTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---- 219
||||||||||||||.||||||..|||||||||||.|||..||||||||||||||||||||||||||| ||
Sbjct 3107 TTTTTGTATTTTTAATAGAGACAGGGTTTCACCAGGTTACCCAGGCTGGTCTCGAACTCCTGACCTC-AGATGA 3179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3180 TCCACCCGCCTCGGCCTCCCAAAGTGTTTGGATTACAGGTGTGAGCCACCATGCTCGGCCTAGAGCAGTGGTTT 3253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3254 TCAATGGAGCAAGGCAGGGGGCAATGTCACTCCCCAGGGAGGGTGACCAGCTGTCCCTGCTTGCCCAGGACCGA 3327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3328 GGGGCTTCCCTGCAAGTGGGGCTTTCAGTGCTAAGACCAAGACAGTCCTAGGAGAACCAGGGGACCCTTGGCAA 3401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3402 CCTATAGAGACATTTCTGGTTGTCACAGCTGGGGCATGGGAGTAGTCCCGGCATCCTGGGTAGGGCGGCCAGGG 3475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3476 ATGCTGCTCTATATCCTGCAGTGCCCAGGACGGCCCCACCACAGACGGGGATCCAGCCCCAAACGTCCATGGTA 3549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3550 CCAAAGCTAAGAAACCCAGAGCTAAGAAACCCAGATCTAGAATGTTCTAGAATGAACATTTCATTTGCAATATA 3623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3624 TAAAGCATCCATCACAAAGAAACAACATCTTCAGCAGTGATCTTGGCAGGCTTCCCTCCTTAGGGGGGTCTCAC 3697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3698 CACGCCCACCCTCTATTGCTGGGCAGGAGGAGGAAGCCGAGGCAGGCTGGGTGCCATTTCCCTGTGGGCCTCTC 3771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3772 TGGGGACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGATGGTGCCGTGCGCGGCAGTATCCTT 3845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3846 CATGGTGTAAGAGTTCACGCGGTGGGCATGCCAGCAGCCGCAGCCCTGGAACATGGTGTCGGTGACGTGCAGGA 3919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3920 CCTCGTTGCAATGCACCTGCAGCTCCCCTTTGGCCCTGCCCTCCATGGCCAGGTTGACCCGGATGTAGAATGAG 3993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3994 TCCCCCGAGGTCGCCACTTTGGCCTCCAGGTCCTGGAGTAGCCTCTTATAACCTGATAAAAGGGGACATGAGCC 4067
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4068 ACAGATGAGCCACAGATACGAGCCTCTGCGAGGAAGGTTGCAGAAAATTAAAGTAGGAGAGAAGGAAGGACCCT 4141
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4142 CCCAGTCTCAGAAGCTGCTCTGGCACTGGAGTCAGTGGGTGGGAGGTTTCCAGCTGGCTTGGGGGCCTCCTGGG 4215
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4216 GACCTGGGGCACAGCCTGGCTGATCCTCTCTTGGCTCTGGGGGTCCCTGGCTGCTGGGCGTGCAGAAGAACCAC 4289
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4290 CAGGGACTTAAGGGTCATGGAGTCTGGCCAGGCAGCTGTGCACACGAGAGGAGTGGTATGTGTACCGTCCGTGT 4363
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4364 TGACCTTCACAGACAGGCAGCAGAAGCCGTCCACCCTCCTGAGAAGCCCCACGGCCTCCTCCAGGGTCGTGTCC 4437
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4438 TCCAGGACTGCCTTGAACAAGGGCTCTGAGGCTTCGTAATCAACCTGAGGGCAAGTCGAGAAGGTCAGTCTCTT 4511
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4512 TCCCCCGGGACTCTGAATCCAGCCAGAAGACAGAAGGCGCTGAGGGCACTGAGGCGAGGCGCGGGCCAGCCCTG 4585
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4586 CCGTAGGACCACTGCCTGCACGCCTTGGTCAAAACAAAGCCACACACCAGAGCCTCTGTGGGGCCTTCACACCT 4659
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4660 CTAGTGATGCGTGCTACACATAGTGCTGGCCAGAGAGTCAACTGCCAACCCTTCCCCAGTCGAGATCGGGGGTT 4733
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4734 CTTTGTGATAAGCACTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAAAGAACCTCGGTTCTAGAACATTCA 4807
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4808 AGAGCATTCTAGATAGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCTGCGGGCTATACCGGGCCCTACAGG 4881
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4882 ATGCTGAGTGGCATCCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCACCCACAGCCTTCCCCACTGTGAAG 4955
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4956 GCCCACCCCCCAGGGCTTCCACCATCCACTTCATTTCTTCTCAATATTGTTCTAAGCTTAGGAGAGTAGATATT 5029
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5030 TTTACAATAAAAATTAAGATGTGTTTTAACACCATTAGAATCTAATTGGCCCCCTTAGGATATCGGGACTATCT 5103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5104 CCCTGAACATCGTCAAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGATAATTGGGAACCTTAAGAGCAGGGT 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 TCCCCAACCCCTGGGCCACATACTGGTACTGGTCCATGGTCCATCAGGACCCGGGTCACACAGCAGGAGGGGCG 5251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5252 TGGTGGGCAAGTGAGCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAGCACAGCAGTAGATTCTCAGAGGAG 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 CATGAGCCCTATCGTGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTCCTTATGAGAATCTAATTCCTGATG 5399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5400 ATCTGTTACCGTCTCCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGA 5473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5474 TTCTGAATTATGGTTCAGTGTATGATTCTTTCATTACATATTACAGTGTAATAATAATAGAAATAAAGTGTACA 5547
Query 220 ---------- 219
Sbjct 5548 ATCAATGTAA 5557
