Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002959392.1
- Aligned Length:
- 5571
- Identities:
- 188
- Gaps:
- 5352
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGAACCCACACAGATGTGGTGGAATCCAGCAGCCTTCCACATGCACACAGTGTCTGCAGATGATGCCTCTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACCGTCTCTTAGATAATCTCATCACCCCCGAACAAAACCCATCCTTTCCACCCGGTAGTTAAGCCTCTGAAGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGCAGACCCTTCAGATCCAGATCAAAATCAAGGTCGAGGTCCACCGAAGAGCCAGAGCCCCACGCCGGAGGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCAGGCCCCTCTCCAACCGTAAACGCTTCTGGAAGCGCGGTGGGCCAGGCCTGTCCTTCGGGACGTGACTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGCAGCGGCCGTGCTCAACTTCTCTCGGGAGCCCCGGGCGCCGACCCATTTCCAAGGGGGAATCCCCGGTACG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCGGGGGCGGTGGCGGGGCGCGCGCCCCGGACACACTCACCCACGCGCACACCTGGCTGGCGGTTGCACGGCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGAGGGGGCTGTCGGGCGTCCCTACCCGCCATCCTCCCCAAACTCCCTCCCCAGCCCAGAGCCCCGCAGCCCGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGCCTCTCCAGCCCCTAACACCGGCCGCGCGCAGCCAGCGGCTGCTAACAGGTACCGGGCGCCTTCCCACGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGGGCGCCGGCCGGGCCTGCGGCTGCTCAGCACCCCAGCACTGCTGGAGCAGGCGGCGGCGGAGTGCGGGACG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCGGGGAGGGGCGCCTCGCGCGCGCCCTGCCACACTCACCACCACGGCATCGCTGTCGGCCACTGATCCCGCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTTCTTGCCCGGCGCGGCGGGGAGAAGGTATGACATAGCTCCACCTACATGCAAGGGGAGCCAGGAAGTGCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCCCTGGCTGGGCTGCCACGTCTCAGAAACCATTAAGCCTATGGAAGGTCTCTGGATTTGATGGCAAATGGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAGAAATGTGGAAAAGATCAAAGTGATGTCAAGGTTGATCTCTGAGTTTGGCATGGCTGAACTCAAACATCATT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGCCATGGACCCACAGTGTCTTCAGTAGCTGAGTGTGGTGTCATTCCCCTATGATATGTGCACTCAATTGCTGG 1036
Query 1 -----------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGC 51
|..|||||||..|.||||.||.||.||||||||.|||||||.|||||||||
Sbjct 1037 CCAGTTTTTGTTTTTTGTTTTTGAGAGAGTCTCGCTTTGTCTCCTAGGCTGGAGTGCAGTGGCACGATCTCGGC 1110
Query 52 TCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCA 125
|||||||||||||.|||||.||.|.|||||.||||.|||||||||.||||||.|||||||||.|||||||||||
Sbjct 1111 TCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGCA 1184
Query 126 CACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGT 199
...||.|.||.|||||||||||||||||||||.||||||||||||.|||||||..|||||||||||||||||||
Sbjct 1185 TGTGCCAGCAGGCCCGGCTAATTTTTTTTGTAATTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGT 1258
Query 200 CTCGAACTCCTGACCTCAAG------------------------------------------------------ 219
|||||.||||||.|||||||
Sbjct 1259 CTCGAGCTCCTGGCCTCAAGTGATCCACCTGCCTCCACCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTG 1332
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1333 TACCTGGCCCCAAAGTTTTAGAAATTGGATCATTTTAAATGTTGGAGGGGAGTTCATTGTTTAGGATGGCTGTG 1406
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1407 TGGCAAATCTTTTTTTAAAGTAAGTAATTCTCCTCTATTATAAGTCACCTCCTGATCTCTACATTTAAGGTTTG 1480
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1481 CTGTCCTGGATGTGTTCACCTATGAATGTAAGTGTGCTGAGATACACAGTGCAAGGCTGAAGTCAGAGTACACC 1554
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1555 ACTGATGAACCCCTGGGAACTGGTAACCCAGCCAGGGAATGAACATCTTTTATGAATCAGTTTATCCACCAAAC 1628
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1629 ACTTGCAGAGAGCCTATCCCATGCCACCCCTGAGGGCACGGTGATGGAGAAGATATGCTTCCTGCCTCCAAGAA 1702
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1703 CCCCATAGTCTAGTGGCAGAGACAAGCAGGTACATAGCTGCCTATAGTACAGCATCACAGGTGCCATAACATTG 1776
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1777 TGTAAACTGGGAATAATTCTATTCTCTGGATATAGAACATCTAACCAAGATATTGAGTATCTGGCTTCCCCTTC 1850
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1851 CCCACACTGGCCCTCACTGGGATCCATGTCTAATATTATGAAAGTCACACAATATCATTATAAACTAATCATAA 1924
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1925 ATGGCACTGTCAGTTTGCTACAAAAACTTATTCAGAAAATATTCAGATTCTCCCATCAACATATGCCGCTATGT 1998
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1999 TGGCAAAAGCTCTGATTTAAAATACTTATTTCGTTTTCCTCTCCGATTTTGTTCTAGTCTTCAAAATGATTTCA 2072
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2073 TACAACATAGCACTGAGTTCCTTAGTTCCTCTGACCCCTGCCAGATCTGAAGCTGTGATGTTCAAAAGTCAGGG 2146
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2147 CAGAGTCCATCTTATGATTGAGTTTCATAAGAGTCTAAGCCACTGATCAACATACTGTGGCAGAGTAAGCTTTC 2220
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2221 TGGGTTCCAGAATTTATTGTGAGTGGGCTGAGGGAGTTGAGAAATGGCATGGGAGGCCTAAAGAGAAAATAACT 2294
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2295 TTTGAATGAAAATTATAGGAAAGTGGATTTGAGATCAAAACAAAGGAAGGTTGATCATAGTTGGAATCATTTAA 2368
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2369 GATTGGTGGGGGTAGTGGGCTTCTGGTTCTTAACCCAGGCCAGGCAGAGGTGTGACAACAGTCAGGGGTTTCTA 2442
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2443 AACAGGGTGGGAGGTTAGATGAGAATAGCCTTCAACCCTTTGTGTTGAACTAAAATCCTAGCTCTGCTTTCAAC 2516
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2517 TCCTAGACTCTGCTTCATCATTGCTAAGTTGGAAAGAGCAAGCAATTGAGAGTCCCTGCTGGCCACAGCTGGGG 2590
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2591 TGCCCCAGACCACAGCACTGAGCCTCAAAGGCAAGTGAGCATAGTGTTGGGAGCTGGGCTTCTGGATCCATCAA 2664
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2665 CTCCATCTGATGACTCGGAAGTTCCTTCAGTTCCCAACACTGGAGTCCAGCAAGGCTGGTTTGTCTTGTTTTAA 2738
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2739 TTATTATTTAGATGACTGTTTGGCTCATACCTGAGCAAGGTTCAAATCAAGTCAGACCTGTTAATTTAATCAAA 2812
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2813 GTTATATAATCACATTTGGGCACTTAAATGTAAACCAATTATGTTGGAAGCCAAGTATCTTGTACTCAGGAGGG 2886
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2887 AGTTCTAATAAGTGCTGGGAATGTATGCTAATGCACAAAGCCTAACCCCCAGAGTGGAGGGTGGAGCACTCCAG 2960
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2961 GGCACTCCTGTTTCGGTGACGTTGTTTTAATAGCTAGTGCTCTGGGTGCAGTCTGGGAAGATATTGGAAACATC 3034
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3035 TCAAGCAAGTATGACATCCATTTTACCCAAGCCCATGGAACCCATTATGTTTGGAACATGTCTGTCTGTGGCAT 3108
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3109 TTGGCTTGGCTTATAAATGCACTATCAGAATCTATAGGAGGCCTTCGCAACAAGACGTGTCTTGGCCTTTCTGG 3182
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3183 TTATCAGCAATCCCTCCACCTCTCTCTTAACAAACATATGCCATAAGTCCTGATCAGGCATTTAGTTTTTTCAC 3256
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3257 TTGGACCTTTTCCTAGTTCCTAGTCTCAACCCCAATGCCTCCTAATCTTGTACTTCTTCAAATACTGGCCCCCC 3330
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3331 TCTACTATGAGAGAGAGAGGAAAGTAGGGAGGAGAAGGAGGAAAAGTTATTGAGTTGATATGAGGGTAGTCAAC 3404
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3405 CTAAAGCAACAATCAGGAGTAAGGTACTGGACTTGAGTTTGAAGTGTTTGTCACTAAACTCTCTCAAACTCTTC 3478
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3479 CAGGCTAACTAGCCTCAGAGGGCTTCTAGCCCATAGTCTCCTTGTATTTTCTGCCCTCCTCACTTGGAGTGGGA 3552
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3553 GGGAACCAGATGTCCAGTCTTTGTCCCGTGTTAAGAACTGGCCTGGCAGGCTTTGTTGAGACCATCCAGACTTG 3626
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3627 AAAGCCTCACAACCAGATGCCATCACAGGCACTTTCTGCTCTTAACCTTTGTCTGTGTCTCCTACATGAACTCA 3700
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3701 TCAGACTGCCTCTGAAGAGGGACATTCTAGGGACAGTTTCATCTTCATCACCATCCTGGATAGGGAACCCTTCC 3774
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3775 AGACTCAGAGTTGCAAAAGTCAGGGAGGGGCTGCTCACTGGAGGTGGAGTCCTTTGGCCAGGTTTCACTGTAAA 3848
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3849 CACATGGCTAAAATGTGTCGCACATGGACAGGCATGCTAGTGTGCTCTGGATACATGCTAGTGTGCCCCAGATA 3922
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3923 TATGCTAGTGTGCCCCGTATAGCTTCTGGCTAAAGGACACACCTCAGCAAGGCCAAATGAGGCATCAGGATGAA 3996
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3997 CTCTTCAAATAGACTTCATTAGACCCACAGAAGACTAACCTTTGCCTGACTTTGGATTACCCCTTTCTTGCCAG 4070
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4071 GAATTATGTTCAATGACTATATCTGGAACTAGAGGTCTTGATAGCCACACTTTGCTTGGTGTGGCTTCTCAGTC 4144
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4145 TTTTAAGGACATGGCTATCAAGGGCTCATGTTTATTCCAGGTCAGCCCTTTACCCCTTTCCTCCAGGGGCATCT 4218
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4219 ATGGCAACAAAAGACCATGACATCTGGCAGGGCTGGCAGGACTATTTAGTTTAGGCAGGAATGTGGGTGTTAGC 4292
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4293 ATGTCAGAGTACATCTGAGAAAACATTCCAAACCAACCTTTCCACACTGGGAACTCAACCCCCAGGAATCACCA 4366
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4367 AAGATAAGGGCAACAGTCTTATCTCTCGAGGGAAGTTCAGGGTAAAGTCCACTCCTGCTGTGGACCAGAGCTCA 4440
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4441 GGGAAGAAGAAAGCTCAGGCTGGCTCTGCCTGTCCACTTGATGAACTTCCACAAATGCCACTCTGGGAGCTGAG 4514
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4515 GCATATGAAGTGGGGAAGAAAATACCAGCCCTGCCCTGGAGCTCTGGGATGGTGGCTGTACACCCCTAAAGATG 4588
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4589 CCAGCAGATCTGAACTGTGGCCTATGTGTGTTTGGGAATTGAGAAATAAGGAGATAGAGGGACAGCAGGCAGGA 4662
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4663 AAAACTACAATTAGTCTCAGCTCACACAGATTTGGGAGTATGCAGATCTGAATTGTGGCCTCCATGTGTTTGGC 4736
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4737 TGAAGGATAATGATCTCAGGCCCAGACTTTTTTTTTTTTTTGTATCACTCGCTCAGGGGGCTCTGACCAGGAGC 4810
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4811 TTCTTTCAGATGACACAGATCCCGAGGAGCCACTTGCCTTCTACCCATGACACTTCTAAGAGTGACTCTTGCCA 4884
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4885 TGTGACCATAGAGATAAGTGAAGTTTTCTCCAATGACATCATTAAGAAGTCTAAACTTCCCCAAAGGGAGAGGC 4958
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4959 TGTGACTAGGAACACAAATGTCTCAGTGTATCACACTCATGCTCCCAGATCTGTGGGCAGAAAAAGAAATCATA 5032
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5033 GAATGGTGCATATCCTAAAAATAAAAAGGAAATTGCTTTTCAAGTTATGAAATTTGGCCCTTCTCATTGTGAGT 5106
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5107 TTAAAGTACATGTTACTGCTTCAGTTTCTAAAACAGGAGGTGGCCAAATTCAGAGTTTAAAATGTCTAAGTGGT 5180
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5181 TATTTGAAAACAGATATTTAGAGGCAACTGAGAGAAGAATACTGGGGCCATGGGTCTGCAGTCACTTTCCCAGC 5254
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5255 AGTGCTCTGAGGCCTTGGGTCTCATAAAAGGTAATCATAGTTACGCCTTTTAAAGAAAGCTGAGTCTAACTGTA 5328
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5329 GCTTTTCCTGCCTGTTGTCCCTCTATCTCCTTACTTCCCAATTCTATCTATCTTTCAAAACCCAGCTCAAATCC 5402
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5403 CACCTCCTTCCATAAGTCTTCCATTGTTTAATATAGTTGGAATTTACCTCTCCCTCCTCTAACTCCCATGGCAT 5476
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5477 TTTATTTACACCTCTCTGATGGCCACTTTCTACTTTCTATAAGGTAAGTTATATACTTGTTTTATATCAATAAA 5550
Query 220 --------------------- 219
Sbjct 5551 TTTCAAAATATTGAAATCTTA 5571
