Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002959736.1
- Aligned Length:
- 4679
- Identities:
- 174
- Gaps:
- 4479
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCGCGGCTGCAGCAGGGCGAGGCTCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGCTCCGGGACTTTCGCTACCTGTTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCCGGCTCCCGTTCGTTCCTCTGCCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGAGCCAGTTCTAACTGGACCACGCTGCCAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCTACAGTTACTATGCCTCGAATCAAGGCATTGATGACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGATAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TATGGAGATGAAACCTGGGTTAAATTATTCCCAAAGCATTTTGTGGAATATGATGGAACAACCTCATTTTTCGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCAGATTACACAGAGGTGGATAATAATGTCACGAGGCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TATTAATCCTCCACTACCTGGGGCTGGACCACATTGGCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATCCACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCATGTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGTGAATACACCTCTGATTTTAATCAGTTCTGCGTTTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTCCAACAGACGGATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAGAGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATGAAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGGTGAGAGCGTAGGCCCGTGGCCACAGGCCAGACTTTCTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CGGCCGATTGGTCACCTGCCAAGCTCTTCTTTTTCTAAATTGAGACCATTTTTCATATTAAGAATGGGATAGTA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTGAGATCTGAAGAATTGGGAAAATACACTAAAACCAGTGTTTTACTGGATACTAGAATCAATGTTGAGAAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GAATTTATTTGGGGGCTAGCCTAACAGGTTTCATTTATTAGTGCTGAACCACTGTAACTGTTCATGATTGAAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTTGTGTTTCAGTGATCATTATATAGTAAAGATGCTATGTGGGGGTCAAGCTTGCTAGTGGCTTGTTCTGGACG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTCGTCCATGCCTGGGCTGTGTGCCCCCCGCCCATCACTCAGTGTCTGCCTGTGTCAGGCCATTCGTGTGTTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTATAAAGAAACACCTGAGGCCGGGTCACATGTAAGGAAAGAGGTTCATCTTGGCTCTCAGCTCTGCGGGCTGC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ACAGGAGGCATGGTGTCGGCATCTGCTCCTGGAGAGGCCTCAGGAAACTGGCGGTCATGGCGAGGGCAAAGCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAGCCAGCACTTCACGTGGCGAGAGCAGGAGAAAGAGAGGGATGAGGAGGGTGTCCGGCACTTTTAAACATCAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTCTCTTGTGAACAGCCACAGCGAGAATGCGCTCATTACTGCGAAGATGGCACCAAGCCATTCGTGAGGAATCT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCCCCATGACCCAGACGTCTCCCACAAGGCTCACTTCCAACACTGGAGGTTCAGTGTCTTTTTTTTTTTTCTG 2960
Query 1 --ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTC 72
|.|||||.|||.||||||.||||..||||||||.|||||||.|||||.||||.|||||||
Sbjct 2961 AAACGGAGTTTCACTCTGTCACCCATGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAA------------ 3022
Query 73 GAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAA 146
|||||.||||||||||.|||.|||.||.||||||||||||||||||||.|.|||.||||||||.||||||
Sbjct 3023 ----TCAAGAGATTCTCCTGTCTCAGCCCCCTGAGTAGCTGGGATTACAGGCGCCCGCTACCATGCCTGGCTAA 3092
Query 147 TTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG- 219
|||||||.||||||||.||||||||||.|||||||||||||..||||||.||.|||||||||||||||||
Sbjct 3093 ---TTTTTGTGTTTTTAGTGGAGATGGGGTGTCACCATGTTGGCTGGGCTGGCCTTGAACTCCTGACCTCAAGT 3163
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3164 GATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCTGAAGGTCCAAG 3237
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3238 TTCAATATGAGATTTGCAGTGGACAAACATCTAAGCCATGTCATTCCCCCAGACCCCTATCCTGCTGCTGATGA 3311
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3312 TCCCCAGGGCAGCAAGAAGGACGGGGTCAGCCAGGCAAGGCAGGCGCAGCCTCTGTGGGCCAGCTTTGCCCTTA 3385
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3386 GCAAAGCTCCTTTCTCCTCCCCATCCTCCCTTTTCTCTCTCCTCATCCTGAAGGGACAGAGCCGTGTGGGGGAA 3459
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3460 TTCAGCCACCTCCTGAGCCTTTCATTGGCGACTGGAAAACCACCTAGAAAGTATAGCAAATCATTTCAAGCAAG 3533
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3534 GCTCGAAATAAGTAGAAGAAACCAGGACAGAAAAATAACTAAGATTTGCCGAGACTTAAATTTTAATTGTCTGG 3607
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3608 CAGTGAAGACTTAGGAAACTAAAGCAAAAGAAGCAGCACAATGAGAGCATCTGCGGCGAGAGTAACAGCAAGGG 3681
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3682 TTGCGGTCCCGTCACTGCAGAGAACTCCTGTAAGAAATGGCAGCAGAAGGAAAAGGGAAATGCCTAGTCCTAGT 3755
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3756 AATGAGGGCACTTCCAGTTAAATGACAGGGTGTGACTTCATACCTGCTGAGGCAGAGAAGCAGAATTGAATGAC 3829
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3830 GAGACTCAGTCTTGGTGAGCACGTGAGGATTCCTGGGGCCACGTTAGTGGCACAGTTCTTTTGGAAGATACTTG 3903
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3904 TAAGTTTACATCAGAAGCTGCGAAATTACAGATTCTTCTGATTAAGTAATTCTTGTGGGAGGCTAAGCATTAAC 3977
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3978 TAAATTACGAAAACCTCGGTTAGCCAAGTCATCGCAGATGGGTCCTTCTATCTGCCTGCTGTGTGCCTGCACGT 4051
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4052 TTCCTTTCCAGAGAAGCCCCGGAGAGGGGACTTTGGTTGGTCCCCACTCCAGAGCTCTGACCACAAAGCCGAGC 4125
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4126 TCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGTCCAAG 4199
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4200 GCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCGTGGCG 4273
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4274 GCCGGACAGCAAGGACATTTCCAAGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGG 4347
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4348 CTTAGACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGG 4421
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4422 CCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTAC 4495
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4496 GCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATG 4569
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4570 GAGTGTATTTTCTCCAAAACTTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCA 4643
Query 220 ----------------- 219
Sbjct 4644 CGGCAATGGATCAAACC 4660
