Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_925324.3
Aligned Length:
5847
Identities:
188
Gaps:
5631

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGCGGCGGGAAGATGGCGGCCTCCAGGAATGGGTTTGAAGCCGTGGAGGCAGAGGGCAGCGCAGGGTGCCGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAAGCTCGGGAATGGAGGTGGTGCTTCCTTTGGATCCTGCCGTCCCCGCCCCGCTGTGCCCTCACGGACCCACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCTGTTTGTAAAGGTGACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTTCAGCCTGTAGAGATAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAAGACTGTAATTTTTTTCAGTGGGAAGATGAAAAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAGCTCATA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCGAAGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAGGTACTTGAAGTTTATTGAGTTGCCCTTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTCAGAGAAAGTTTTGTCAAACATGTCAGCAGTTGTTGTTACCAGATGACTGGGGGCAACATAGTGAGCATCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTTCTGGGTAATGTGTCCATTACCCAGTTAAGAAGGCCCAGTCAACTCCTTTATCCACTGGAAAACAAGAAGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAAATGCCCAGTATCTGTTTGCTGATCGGAGCTGTCAGTTCTTGGTAGACTTACTTTCTGCCCTCGGATTCAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGAGTACTGTGTGTTGGAACACCAAGGTTGCATGAGCTGATCAAGTTGACAGCATCAGGTGACAAGAAGTCTAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CATTAAAAGCCTTTTATTGGATATTGATTTTCGGTATTCACAGTTTTATATGGAAGATAGCTTTTGCCATTATA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATATGTTTAACCATCATTTCTTTGATGGAAAGACTGCCCTTGAAGTATGCAGAGCATTTTTACAGGAAGATAAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCGAAGGAATCATTATGGTGACGGATCCTCCGTTTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTAATTGCTATGTGGAAAGAAGGTCAAAGCCAAGATGACAGTCACAAAGAACTACCCATTTTCTGGATTTTCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTATTTTTTTGAATCCCGAATTTGTCAGTTTTTTCCAAGCTTCCAGATGCTGGATTACCAGGCTATTCCCTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTTTGGACTACAGGTTGTTTTTACCTTTTAAGGTAGATTATGATAATCATGCACTTTATAAACACGGAAAGAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGTCGAAAACAGTCTCCCGTGCGTATTTTCACCAACATTCCGCCCAACAAAATAATCCTTCCTACTGAAGAAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGTACAGATTTTGCTCTCCGTGTCAACGGTATGTTTCTCTAGAGAATCAACACTGTGAGCTCTGTAATTCTTGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACATCCAAGGATGGCAGGAAATGGAACCATTGCTTTCTCTGTAAAAAGTGTGTAAAGCCTTCCTGGATCCACTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAGCATCTGCAATCACTGTGCTGTTCCAGATCATTCTTGTGAGGGCCCCAAACATGGCTGCTTTATTTGTGGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AACTGGATCATAAACGCAGTACTTGTCCTAACATTGCTACATCTAAGAGAGCTAACAAGTCAGTCGAATACTTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACTAGAAAAATGTATTCCATCTGTGTTTTATACAGGATAATCCACAAAAGCATGCAACATTCAGAGGATCTTGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGTGCCAAGTTAATTGTCACTTTCACTATTAAGTACTGGCTGCATAGATGGATGGAGGGAGGAGAGGAAGATGA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTCAAAGAGCTTGCTTTCAAAGAGCTTACAGTTCTACAGCTTAGAGATGAAAATAACCAAAATATGAGAGCTGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGAAAGCAGAAGCAAAGAAAAAGTAATAAGATGAAAATGGAGACCACGAAAGGACAATCCATGAATCATACAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTGCTACAAGGAGAAAGAAAAGGAGGGAAAGAGCCCATCAATATCTTGGCTCTTAAATGTCCAGTGACTGGAGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATAAGAAAGATTTATGGTCCAACCTTTGATGCCATTTTCTGAAAGTGCCACACTGGACTTAAATTCAGCTGCTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCAGAGGTGTGCACCTTTCTGAGCTAGATAACAGGCAGGTGGCATTTGCTGGTTTACAGTCCCTTATCTGCCTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCTGGAGACATGGGGAGTTGTTCCATCTTCAGCCAGTTTACTAGTTCTTTCAGCATTCATTTTTCCTCACTTTA  2072

Query    1  --------------------------------------------------ATGGAGTCTCATTCTGTCGCCCAG  24
                                                              |||||||||...||||||.|||||
Sbjct 2073  AGTCTCTCCCAGTCACATTGTTCTATTTTTATGTTTTCATTTTTTTTGAGATGGAGTCTTGCTCTGTCTCCCAG  2146

Query   25  ACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGG  98
            .||.|||||.|.|||||..|.|||.|||||||||||||||||||||.||.|.||||||.||||||||||||..|
Sbjct 2147  GCTAGAGTGCAATGGCACAACCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTTAG  2220

Query   99  CCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATG  172
            |||||.||||||||||.||||.|||||||.||.||||.|.|.||||||   |||||||||||||||||||||.|
Sbjct 2221  CCTCCTGAGTAGCTGGAATTATAGGCACATGCCACCACGACTGGCTAA---TTTTTGTATTTTTAGTAGAGACG  2291

Query  173  GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------------------  219
            |||||||||||||||||||||||||||||||||||||||.|||||||                           
Sbjct 2292  GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATTTGCCTGCCTTGGCCTCCCAAAG  2365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2366  TGCTGGGATTACAGGCATGAGCCACCTCACCCAGCTCCGGTCACATTATTCTAGCCTTTTTATCCAAAAAATGG  2439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2440  GCAGACCATTCTTTTGCAGAAGATGTCAGAAGAAAATGAAAGTGAAAACCTATGCAGTTTGTTTACCGTGAACA  2513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2514  TAAAAGTATGTTAATTTAAATAGGAAAATATTTTATGTTAAATATGAAACAATAGTTTAAACCCCACTTGAAAA  2587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2588  GTATAGCGTACAATTATTTTTAGACTGAATTTGAAGATGATGGAAAGGGTTTTTACAAAGGCACTGTTTAGATA  2661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2662  TACAGATTATAATTATAATTACATTATTATTAAATATTTATTCTTCAAGTACTTTTTGCAGTTGTCCTCTGACG  2735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2736  GTCTAGAATCACTTAAATGCTTGTTGAATGAGTGAGATGTTTAGAACTACGACTTGCTCTGTCATTCCAGTGTC  2809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2810  GTTTAACCTATGCAGTAAGATTCTGTCTTTGTAAAAGTAGTTCGTAGCAGAAGCCAGGATAGTTTGGTAATTAA  2883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2884  ACGCCCAAACTAAACTCCTCATTCCTACCCTTAATATTTCCTGGCTGTATGATCTTGGCCAGGTCACTCTCTAA  2957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2958  AAGCCCCGGTTTCTTCATTATTATCATTATTATAATGGGGAGAATAACAGCTATACCTGAGGTTTGTTTTGTGA  3031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3032  TTAAATTAAATGAGACCCAAGTGCTTGGCTCTCAGTTCTCCTCTGTCATTGGTGTGTTAGGTTAACAATGAAGA  3105

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3106  TTGTTACTGGGTCTAATGGTAATTACCTTTTGGCCTGATAACAAAGCATTGAAGGCAGTAATTTGAACTCCCAG  3179

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3180  AACAAACAGTTCATCTCCCCGTTTCTGTGCTAGTTATTGTCTCCTTAAGACTGAATTGTTTTGAATGACTTATA  3253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3254  TTTGCATAATGACTTTTCTCTTGTTTCCAAACAACTGCTGTAGAGCAGATTTGAAGGCATCTTTGTTTGGGGTT  3327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3328  AGGCAGAGCCCTGTAAGTAAGGGTGGAGGAACTGCACTCTATCTGGTATTTAAATTCCAGGTAAGTTAGGACTG  3401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3402  ATGCCTGGTGTAGAATGCTCAAGTGTGGCCCAGATCAGTGTGGCAGTGGTGTACATCAGTTGATGTCAAAAGAT  3475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3476  GAGTTATACCCCTGGACTTCATAAGCATCAGAAAGCTCTTCTCCCTTTTGTTACATGGAGGGCTATGATAGGAG  3549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3550  GGGCACATTTGGAGGTGACTGGGTGAGATATGAAGTTTGTAAAACCGTTGTGAGAGTTCCCCTCTCTGATTCAA  3623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3624  GCAAGGATAGGGACATTGCCTGACTTTATGGTGTTCACCATTCCATGATAAAATCTATTGAAATCTCCTCTGAA  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  ACTAAGACACCTGAGGGACTATGACTACTGAAAAATTGAGTTCTGAAGGCCAACAGTTATTCTCATCACTATAT  3771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3772  TGCCTTAATGTTAAGATACCATCAATTATAAAATACATCATTGATTTTATCATAGCTTTTCAGGGGGAGAAGAG  3845

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3846  AAATAATACTTCATTAATTAATTTTTAGATCATCTGATTTCAGAAATACTGAAATGCAAAAAAAAAAAAAATCT  3919

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3920  TAGAATTGAGGAAATAGTTATAATCAGGAATAATGTACTTATTTATTTTGAGACAGAGTCTTGCTTTGTTGGAC  3993

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3994  AGGCTGGAATGCAGTGGTGGGATCTCTGCTCACCGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTGTGCCTC  4067

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4068  AGCCTCCCTGGTAGCTGGGATTATGGGTGTGTGCCACCACACCCGGCTAATTTTTATATTTTTGTAGAGACTGG  4141

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4142  GTTTCGCCATGTTGGCCAGGCGAGTCTCAAACTCCTCATCTCAGGTGATCTGCCCGCCTCAGCTTCCCAAAGTG  4215

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4216  CTGGGATTACAGACGTGAGCCACCACACCCAGCCAGGAATAATGTACTTTAAAACTTTATTACTGTCTTAGAAA  4289

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4290  GTTAAAAATAGGAAATTTGGTGATTTTACACTTATATTCAATTAATACTAATTTTAAGGACTTAATCTCTATTC  4363

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4364  CTTTTTCAGAGAATAAACTAATTGGTAGCCTGTAAAAATGTGTCTCTGGGAGGTAGAATGTGAAGCGGGATGAG  4437

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4438  GTCATTTGTTCTTAATAGAAATCTGAACATCTTAACATTAAGATACCTTCTCAAAATAGCAATAGAAGAAAATC  4511

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4512  CCTAAAATTTGACAGATAACATTTTCTAAGCTTTTTAAAAGGACATTTTTAATAAATACAGCTAAATTTCATTC  4585

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4586  TTCTTATATTATGAAATTTAATGAGAAACAAAGTCTTTTTGTAGGCTGGATTTCATGTTTTTTCCTAATTAGTC  4659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4660  CAGTACCTAGACTAGTTTATCACTCCATATGCCCCATTCTTTTCATCCGATACTGTTCTTTCTGCTTGGAATAT  4733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4734  GTCCCTCCATGTGGCCACTCCGTTCTCTTTTGGGAATCTTCCACGAGTCCCTGATACTGAAACCTTCTTTGGCC  4807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4808  CCTTGGTGTTTGATACCACATTTAAGGCCTTTCACATATTATTCTGTGATTATTTTTACTGATTTTATTTCCCT  4881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4882  CAAAGATTTAGGTCTCTTAATGTCAGCACCCATTTCATCTGCTCTTGTGTATCTTGTGCCTTTTTGGTGCTCAA  4955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4956  TAAAAATTTGATGTAAGCATGGAATTTTCTAGAGGCTTTGAAGTGGTAGGCATGCCTGAAATACGGACTGGACC  5029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5030  CACTCTATTATGTTTCTTCTAGGGACTGAAAAGGGAAACAGATTTGTATTAGGAGGCACTTAGAGTCAATATGA  5103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5104  GGACCACCCTAACTGAAGTTTTAAATGTGGGGATGTGCTGCGTGAAGATTAGTAGCCTTGTAGCAGGATGAGCC  5177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5178  GTGGACAAAACCCCACAGACACCAAGATAGTGAAGGAAGTAGCTTTTAATCAGTTGGAAGCATCGACAGTCTAG  5251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5252  TGTCTTAAAATCCGAGTTTGTTGAGTGCACAATTTCTGTCCCTTTTAAGGGCTCACAACACTAAAGATTTTACA  5325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5326  TGACAGGGCCGTGATCGATTGAGCAATCTAGGGGGTATGTGACAGGGGCTGCATGCACCGGTAATCAGAGTGAA  5399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5400  ACAACAGAACGAGAAGTTTCACAATGTCCTTCCATACAATGTCTGGAATCTACGGATAACATCGGTTGCTAGGT  5473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5474  CATGGGTTGAATTTTAACTATCAGGCTAAGGTCAGGCAGGCCCAGGCCTGGTTTTGGGTCTGGTGCCTGGCACC  5547

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5548  CGGCTGCCTGCCTTTGGTTTTGCTTCCTTGTTTCTTAAAACAGGTACTGAGCATAAAACAATATAGAACAATAC  5621

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5622  GGGGGGGGATCTCTTTCTCTCTTCTCTCAGCTTTATCTGCAAGACCCCTTCAAAGTAATCTGCAAAATACTAGG  5695

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5696  CATCTGGGAGAAGTTTGACTAATCTTGAAATATAAAATCACAACCTACAAAGGGTCCTGGTCAGCTGCCACTGC  5769

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5770  CTTCACAATGTCCCTGTTGGTCTCTCCACTGGAGTAGTACATCTGTTGCCAGAGAAATAAAAATGTCAGTTTGT  5843

Query  220  -  219
             
Sbjct 5844  G  5844

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.