Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_933748.3
- Aligned Length:
- 4665
- Identities:
- 190
- Gaps:
- 4448
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTCCATCTCTTCACAGTCATGGCTGATCTTGTCATCCACTTTTGGGAGATTCTCCTGTATCTGGGCAGGGTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCTTCTCTACATCAGGATCTCATTCCCATCACCCAGAATGCAGTGCTGTGGCACGATCACAGCTCTCTGCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTCAATTTCCCAGGCTCAAGCAATTCTCCCACCTCAGCCTCCCGAGAAGCTGGAACTACAGGAATGTGCCACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCATCGGGCTAATGTTTTGTATTTTTGGTAGAGACAGGGTTTAGCCATGTTGCCCAGGCTGGTCTCGAATTCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGCTCAAGCAATCCTCTCACCTCAGCCTCCTAAAGTGCTTGGACTAGAGGTGCAAATCACCATGCCTGACCCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTATCTCTACTTTTGGCCAGAAGCAATCCAGTTAACACTCTATCATATATTATTCCTCCTACTGTTTTCTCCTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTAAATTCTTCAGCTTTGGCTGTTTGCCCATTAGTCACTGCCTGGGAGTTTTCAACTTTTAAAATTTGTGACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACATTGTTAGGTCATTAAGATGGGTCCTCATCCGATGTAACTGGCGTTCTTACAAGAAGCAGGGAAATGACGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCGGAGACACAGGAGGGGGAAATACCGCGTGATGATGGAGTTAAAGACAGGAGTTATGCAGCTGCAAGCCAAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACACCAAGGGCTGCTGGTGACAGCAAGCGAGGAGGGAGCCTGGCCCTGCTGGCATCTTGATTCAGACTTCCAGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTACCACTCTGAGAGAATAAATTCCTGTTGTTTTAAGCCACCCAGTTTAGGGTGCTTTGTTGCAGCCGCCTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAAAGGAATACATCGTATCATTCCCAGAAACTGCTTGAGTCCCAGGGTTTGAGACTGGAAAGTGCTGAGCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCTCACTACCAGATGCCACCTTGGCGAGGAATGCAGGGTGTTGGTTTCCAAGGCTGCTGCTGGTGAGGTGGAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGGAGGATGATAATAGGATGAGAAATTGGGGTTTTTCAGATGTGATTCCGTTGTCCAAGATTCTTAAGATGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAACAAAGTTGATATCTCACTCACTTCGATTTGATGCACTTTACCTTCCATAGCAAATATTTATTACATCCGAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGACAAAGGCAACGGGCAGAAAAGTGTACAGCCATTTCTGTCACACTGAGAATCAAGCCTGGATTGCCTCCAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAGAAGATGATACAGGACTATTATAAGGACAAGATTTTTCAGGATAAGACACAGTTCTCATGTGTTCAGACAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATTGCTTTTCAAATCACTCTGTATAGGGATGGGTTAAACCCAGCTCTAAAATAAATATTTATATGCCCTAAAGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTCCAACTAGGAAGGCGGAAAGGCTCAGATATCAATGACCAGCATGGGCAGTGACATGGGTGAAATGTGGTGTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCTGGCATCAAATTTTCTCAGCTTTCAACTATTCTCTGTTTTTCTAGAGGATTGAATACATCCTGATATTTGAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACCAGTTGTTAGGCAATGCATTTGAATTATTAATAAGAATGAAGAGGTAACCATGGCAAGAGAGGAAAAAAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAACTAGCTCTCCAGGTTGCGGAGATGGTACCTGCAAACTGCTAAGATACATAAAAGCAAGGGAATACAACTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGAGCATAGATGCTTAAATGCACTTCCTTTCTCTCATCCACTACCTTAAAGGTAGCAATTATGCTTTATGTGTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CATGATAACAAATGTCTTCTCCATTCATCTGTGGCTAGTAGCTTACAAGGCAAAGATTGCACACAAGGTGACAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTTGCTCTCCTCCCTTCCCCACCCCCACTCCCGCACATCCCCCTGTAAGAGGGACCTCTCATCCACGTCTCCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGAGATTACTGCAATTAGCATGTTTCCTATCAACCCTTCCTGTAAATCTTTGGTTCAAGGAAGTTTCCTTCCAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCCTCACCTAGAAGAAAGTAGACAAAAACACAGGCTCAGCACTTTCCAAGTCAAAAAATATAGTCAGGTCCTCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCAAACATGGGCAATTCTCTGCTCTTTATCTATGCATTTCCTCAACCTTACATTGACTCAAGGAAGATATGCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCCTTAGGAGAGCCAAGTGAGTTAAAAACCATTGTCATAGTGTGCCCAAGTGTGAAAATTATTAAAGTACCCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTGTACAGCTCCTGGATGAGAGGAGACAATAGCTGGTGGGGCTGGAGTGCAGGTCTTTAATCTTCTATAGGAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCACCCGTAAAATTTGATTCGTTCAATAGAAGGGGTGCTGGAGTACCTGCTAGAAGTCAGGCCCACCCTGTGCT 2294
Query 1 ------------------------------------------------------------ATGGAGTCTCATTC 14
.||||.|.|||.||
Sbjct 2295 CTGTACTTGTCTGTACTTGACACACATTTCTCTTGAGGGCCTTTTTTTTTTTTTTTTTTGGTGGACTTTCACTC 2368
Query 15 -TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATT 86
|||.||||||.|||||.||.||||||..||||||||||||||||||.|||||||| ||.||| ||||||||||
Sbjct 2369 TTGTTGCCCAGGCTGGAATGCAGTGGCGCGATCTCGGCTCACTGCAATCTCTGCCT-TCCAGGTTCAAGCGATT 2441
Query 87 CTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTT 160
||||||||||.||||||..|||||||||||||||||||||.|||.||||..|||.||||| |.||||||.|.||
Sbjct 2442 CTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCACCCGCCACCAGACCCAGCTAA-TCTTTTTGGAATT 2514
Query 161 TTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------- 219
||||||||||.||.|||||||||||||||||||||||||||.|||||||||||||||.|
Sbjct 2515 TTAGTAGAGACGGTGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGCGATCCGCCTGCCTC 2588
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2589 GGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCGGCTGTCTTGAGGGCCTTTTGGACTTAGGA 2662
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2663 GGAATCCAGATCACATAGAGAGATATTCCGTTGTAGGGTAGAGTAACACACAGGGAACACTGAGATGAGGGGTC 2736
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2737 CTCCTTCTTGCCTAAACAAGTCAGGAAACATTTGCTGAGGAGGGGGCCTTGAATGTGGCAGGGGATCTACAATG 2810
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2811 CTGTCCACCCTGCTGGTGATAACTCCTTGAAAGCTTATAGCCTTGTTACCTTGCTCACCAAACTACAATGGATC 2884
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2885 CCCAGAATAATAAATCCAAATTCTTTTGATGGCAACTGAACACCCTAATTACCATTCAGCATGGTTCTCTTGCT 2958
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2959 CTTCCCTTCAAGCAATACTAGTTTCTATTCCTCCTGCTTATCCTTCCTCCTGTGCTGCCATTTAAAATGTATAT 3032
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3033 TTTTCCAACTGCCGCTTATTCAAATCCTCTATTTTCTTTCGTAGTCCAGCTAAAGGCTTACTTTCTCCAAGAAA 3106
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3107 CATCTGGTTTCATACACATATTTCTTTCACTATACCTTCCGCCTCTATTGCAATGTCATAAATTTGTTCTGATG 3180
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3181 TTATTTTGAAATAGTTTCTGTTGTGTAAGAGTACCTTGTCTCCCTACAGGGATAAAATTCCCAAAGACAATAAA 3254
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3255 TTCAGAGTTCTAGCAGATAGTTCAAAGAGCAGGAGGTTATGAGAGAGAGTACCTCCCCTCCCTGATCCTCAACT 3328
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3329 CTCAGGCTGAGCTGTTCTCTGGATAGTGCAGCAGCTAAAGTCTTGGTTTCAATGAAGATACGTTTCCCTATCCC 3402
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3403 CAGAACCTGTGCGGAGGAGCGGTCCTCTAATGCGGTGTTGGTGAAGAAGGATTCGAGAGGGAAATACCAGGAAG 3476
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3477 CCCACAGCTCCATTTCCCCTCCCAGATTCTACAGATGCAGGGTGGGTGGTCTCTAGGGAGACTTCTCCGGAACT 3550
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3551 AAGATGTATTAGTTCCGAGGACTGCCGTTACAAACACACAAACTTGGTGATTTCATAGAAGTTTGTTCTTGTAT 3624
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3625 AGTCTAGAGCCCAGATGTCCAAAATCAAGGACCATGCTTCCTCCAGAAGCTCCACGGAAGAATCCGCTGCATAC 3698
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3699 CTTCTCCTGGCTCCTGGTAGCTGCTGGCTGTCCTTGGTGGACTCTGGCTTATGGCTGCATTACTCCAATCTCTG 3772
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3773 TCTCCTTGATCATATTGCCTCTTTCTCTTCTCTCTGTCAAATAAATCTCCCTTACGCATCTCTTATAAGGGAAC 3846
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3847 ATCATTGGATTTAGGGCCCAACCAGATAGTCCAGGATGACCTCTTCATCTAACAGTCCTTCATTTAATTACATC 3920
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3921 TGCAAAGACCCTTTTCCAAATAGAGTCACATTCAGAAGGTTCTGGGAATTTGGACACGAACCTTTTTGCAGGCC 3994
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3995 ATCATTCAACACCCACTACATCAGGTTTCTGACAGTACCATGGTAATCGAATTCTCTGAATTTTCCTCTAACCA 4068
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4069 TGGTGATTTACGAAGCATACTCATCATTCAGCTTAAGTATGACAAATAATAAAGTCACTTTCTGCTCCTGAGTT 4142
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4143 ATTGGCTGAAATTTATACAGGGAGCATTTGCAAAGTGCTTTCACGAAAAAAAAAAGATAAACTAACTCTGCCCT 4216
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4217 CAAGGATATTATAATCCAGTAGGAAAAGTAAATATGTACACAAGTTTAGGAGAGTTGAATGAAGGTGAAAAACA 4290
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4291 CAATACTGTGAAGCAAGATTGGGGAGAGAATAAAAGCTGTTCCTTTTCTCTCTCTTTCTTCCCCCACAGCACTC 4364
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4365 TTGCTGGCATGCATTCAAACACCTTATGCACATCACAACTGTCCCATTAGCTGATGCTTTAGGTCACTTCTTTT 4438
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4439 GGCTGAAGGCCAATGGATACCCTTTGATAAATGTGACTTTCTGGAGTTCCCATGAGCCCCAAATCTGAACCTGT 4512
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4513 CATACAGAAAATTTATATTAAATATATGGCAAATGCCTCAAAAAACTCAAAGAAAAGCCAAAGTGAATAATACT 4586
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4587 ATTTTTTCAGATTTATTTTCTTTAGTAATGTGAGTCTATGGATAATTTTATATAAAGAAGATATATATTATGTG 4660
Query 220 --- 219
Sbjct 4661 CAA 4663
