Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_935292.2
- Aligned Length:
- 5002
- Identities:
- 192
- Gaps:
- 4783
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGTTGGTCAAAATTCTGGGGGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCCCAGTGGAAACACCAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAATTTGTGTGGTGAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGGCTGGAGTACAGTGGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTCTCCCGAATAGCTGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTAGAGACAGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTTGTGAGAGTGACATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGTGTGGGGACATACAAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTGACAACACAAATAGTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGGTATGCAGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGCAGAGGTTTGGAGAGGTTGGATCAGGTTGGGGTGTGGAGGGCGGGGAGGGAAGGAGTTCAGAGAACCTTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGAAGAAGGTAGCATCTGAGCGGACATCAAAGGTGAGCAGAAGCTGCGTAAGCTGAGAGAGGGTGGAAAAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGCGTTTCCAGTGGAGGGACTTAGCACAAGCAAAGACAACAAACCCTTGGGCCTGTAAAGGAAACAATAAATTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTTGTCTAGAATGTGACAGTAGTGGAATATGAGATTCAACGACTGTCCTAGCTCTTTTTGAAAATTTTGCTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTACATAGTTACTTAATAGCTCCAATCTGGAAACAACCCAAATGTTCATTAACAGAAGACTGGATAAACAAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGGCATATCCAGACAATAGAATGCTACTGAACAATTAACAAAACTGTAGACACAACATCAACAAACCTAAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TAATTATGTGTCATGAATGAAACCAGAAAAAAGAATAAATACTTCATGATCTCATTTATAAGAAAATTCTAGAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGCACAAACTAAGCTACAGTTAATATGTAGTTTCCAGGGGATTCGTTATCAGTAGTGCAGAGAGAAGAGGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TATAACAGACATGAGGTAATGTGTTGGGTGATAGATATGTTCATTATCATAGCTATAGAGATGGTTTGAAATAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATGTACATGAAAAATGTATCAAACTGTATACTTGCAACATGAGTTTTATTGCATGTCAATTATACTGCAATAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCGTTTAAAAAAGGGTTCTACATAAAAATACAAATCCACTTATTTTAGAAAACCAGAAGTTTTGGCAACCGTAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCTGATTCTGCCATCTCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTGGCAAAAGTCAGCAGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AATGAAGGCTATTTCCACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATGGCTGGACTCTATCTAC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTCCCTGTAATCTCCACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACCATAAAGACTATGGAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCCAATAATCTTTAATGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAGATTTGGAATTTATAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGTACACCCTGATTCTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGGAAGGGACACATTCTCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGTTTACTGCAATATCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAATGCCTTTTAAATTTTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CAGCAAGCCTTGTACAACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCTTCCTGCCTGCTTTCCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TCTGAGCATACAAATTTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGAGCCTAATTATTTCTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACTTATCCCTAAACAAAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGACAGGTCCTGGGCTGGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AATCCAGGAGACTGATGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCCATGAAGAAGGGAACCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATAAGTAAGCTGCCACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTATAACCAGCCAGTGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGGGAATGAGGTCCCTAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAGAGAGAGCCTGGAGGTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCACTTTCTTGAGCACATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGATGGCTTCTGGCACAGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TATTGGATGTGACATAATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTACCTCCTGAAAGCTCCCT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCATACCTGGCACTAAAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTCGCTTCTGTCTGATGAC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCCCTGCAAAAAGGCTACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACAAGGATATAACACATCC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CCTGCTCTCCTAAGGAAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGATTTTTTTTTGTTTGTT 3478
Query 1 --------ATGG-------------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTC 53
.||| |||||||.||||||.|||||.||||||||.|||||||.|||||.||||.
Sbjct 3479 TGTTTTTTTTGGTTTGTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTT 3552
Query 54 ACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACA 127
||||||||||||||||||.|.|.|||||.||||||..||||||.||||||.||||||||||||||||||||||.
Sbjct 3553 ACTGCAACCTCTGCCTCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACC 3626
Query 128 CGCAACCATGCCCGGCTAA-----TTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCT 196
.||.||||.||||.||||| ||||||||||||||||.|||||||||||||||..|||||||||.||||||
Sbjct 3627 TGCCACCACGCCCAGCTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGGTCAGGCT 3700
Query 197 GGTCTCGAACTCCTGACCTCAAG--------------------------------------------------- 219
|||||.||||.||||||||||||
Sbjct 3701 GGTCTTGAACCCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGCCA 3774
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3775 CTGCGCCTGGCCTCAATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGCATAAAGCCTTACTTCA 3848
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3849 GTGTCAACTTTTGGTGCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTATGCATTCATAAGGCTTT 3922
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3923 TGCAGGGTGAACTTTCTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCACATTGTCCCCACTCAT 3996
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3997 AAAACCTTTCTGTGTTGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTAGGATTTCCCACACCTG 4070
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4071 CTGTACACATAAGGGCTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGCTCTGGCTAAAGGATTT 4144
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4145 CCCACATTCTTTGCACTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCAAGTCCATATTTGGAGC 4218
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4219 TCAAAGATTTCTTACGCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGGTTCCTCAAAAAACTAA 4292
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4293 AAATAGAGCTACCATATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAAGAAATCAGTACATTGA 4366
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4367 AGAGATATCTGCCCTCCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGAAGTAACCCAAATGTCC 4440
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4441 ATCAACAGACAAATGGATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCAGCCATAAAAAAGAATG 4514
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4515 AGATCTTGTCATCTGCAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAATAATCCAGGCACAGAA 4588
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4589 AGAAAACATTGCATGTTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACTCATGGAGATAGAGAGT 4662
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4663 AGAAGGATGGTTACCAGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGGGTGTTTAATGTGTCCA 4736
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4737 AAAAATGGTCAGAAACAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTATAGTCAATAATAATCG 4810
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4811 AATGGTACATTTAAAAATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGATAAATGCTTGAGGTGA 4884
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4885 TGGATACCCCATTTACCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTATCCATATACCCCATGAA 4958
Query 220 -------------------------------------------- 219
Sbjct 4959 TAAATGTATATACCTACTATGCACCTACAAAAATTAAAATAATA 5002
