Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_935292.2
Aligned Length:
5002
Identities:
192
Gaps:
4783

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGTTGGTCAAAATTCTGGGGGTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCCAGTGGAAACACCAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGAATTTGTGTGGTGAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGGCTGGAGTACAGTGGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTCTCCCGAATAGCTGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGTAGAGACAGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACTTGTGAGAGTGACATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGTGTGGGGACATACAAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGACAACACAAATAGTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGGTATGCAGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTGCAGAGGTTTGGAGAGGTTGGATCAGGTTGGGGTGTGGAGGGCGGGGAGGGAAGGAGTTCAGAGAACCTTTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CTGAAGAAGGTAGCATCTGAGCGGACATCAAAGGTGAGCAGAAGCTGCGTAAGCTGAGAGAGGGTGGAAAAGAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGCGTTTCCAGTGGAGGGACTTAGCACAAGCAAAGACAACAAACCCTTGGGCCTGTAAAGGAAACAATAAATTA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTTGTCTAGAATGTGACAGTAGTGGAATATGAGATTCAACGACTGTCCTAGCTCTTTTTGAAAATTTTGCTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTACATAGTTACTTAATAGCTCCAATCTGGAAACAACCCAAATGTTCATTAACAGAAGACTGGATAAACAAATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GTGGCATATCCAGACAATAGAATGCTACTGAACAATTAACAAAACTGTAGACACAACATCAACAAACCTAAAAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TAATTATGTGTCATGAATGAAACCAGAAAAAAGAATAAATACTTCATGATCTCATTTATAAGAAAATTCTAGAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAGGCACAAACTAAGCTACAGTTAATATGTAGTTTCCAGGGGATTCGTTATCAGTAGTGCAGAGAGAAGAGGAT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TATAACAGACATGAGGTAATGTGTTGGGTGATAGATATGTTCATTATCATAGCTATAGAGATGGTTTGAAATAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATGTACATGAAAAATGTATCAAACTGTATACTTGCAACATGAGTTTTATTGCATGTCAATTATACTGCAATAAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCGTTTAAAAAAGGGTTCTACATAAAAATACAAATCCACTTATTTTAGAAAACCAGAAGTTTTGGCAACCGTAT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GCTGATTCTGCCATCTCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTGGCAAAAGTCAGCAGGC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AATGAAGGCTATTTCCACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATGGCTGGACTCTATCTAC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTCCCTGTAATCTCCACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACCATAAAGACTATGGAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TCCAATAATCTTTAATGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAGATTTGGAATTTATAAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTGTACACCCTGATTCTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGGAAGGGACACATTCTCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CAGTTTACTGCAATATCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAATGCCTTTTAAATTTTCC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CAGCAAGCCTTGTACAACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCTTCCTGCCTGCTTTCCC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TCTGAGCATACAAATTTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGAGCCTAATTATTTCTCA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACTTATCCCTAAACAAAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGACAGGTCCTGGGCTGGG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AATCCAGGAGACTGATGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCCATGAAGAAGGGAACCT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AATAAGTAAGCTGCCACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTATAACCAGCCAGTGAGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGGGAATGAGGTCCCTAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAGAGAGAGCCTGGAGGTC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCACTTTCTTGAGCACATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGATGGCTTCTGGCACAGG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TATTGGATGTGACATAATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTACCTCCTGAAAGCTCCCT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CCATACCTGGCACTAAAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTCGCTTCTGTCTGATGAC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TCCCTGCAAAAAGGCTACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACAAGGATATAACACATCC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CCTGCTCTCCTAAGGAAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGATTTTTTTTTGTTTGTT  3478

Query    1  --------ATGG-------------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTC  53
                    .|||             |||||||.||||||.|||||.||||||||.|||||||.|||||.||||.
Sbjct 3479  TGTTTTTTTTGGTTTGTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTT  3552

Query   54  ACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACA  127
            ||||||||||||||||||.|.|.|||||.||||||..||||||.||||||.||||||||||||||||||||||.
Sbjct 3553  ACTGCAACCTCTGCCTCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACC  3626

Query  128  CGCAACCATGCCCGGCTAA-----TTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCT  196
            .||.||||.||||.|||||     ||||||||||||||||.|||||||||||||||..|||||||||.||||||
Sbjct 3627  TGCCACCACGCCCAGCTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGGTCAGGCT  3700

Query  197  GGTCTCGAACTCCTGACCTCAAG---------------------------------------------------  219
            |||||.||||.||||||||||||                                                   
Sbjct 3701  GGTCTTGAACCCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGCCA  3774

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3775  CTGCGCCTGGCCTCAATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGCATAAAGCCTTACTTCA  3848

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3849  GTGTCAACTTTTGGTGCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTATGCATTCATAAGGCTTT  3922

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3923  TGCAGGGTGAACTTTCTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCACATTGTCCCCACTCAT  3996

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3997  AAAACCTTTCTGTGTTGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTAGGATTTCCCACACCTG  4070

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4071  CTGTACACATAAGGGCTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGCTCTGGCTAAAGGATTT  4144

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4145  CCCACATTCTTTGCACTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCAAGTCCATATTTGGAGC  4218

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4219  TCAAAGATTTCTTACGCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGGTTCCTCAAAAAACTAA  4292

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4293  AAATAGAGCTACCATATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAAGAAATCAGTACATTGA  4366

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4367  AGAGATATCTGCCCTCCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGAAGTAACCCAAATGTCC  4440

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4441  ATCAACAGACAAATGGATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCAGCCATAAAAAAGAATG  4514

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4515  AGATCTTGTCATCTGCAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAATAATCCAGGCACAGAA  4588

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4589  AGAAAACATTGCATGTTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACTCATGGAGATAGAGAGT  4662

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4663  AGAAGGATGGTTACCAGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGGGTGTTTAATGTGTCCA  4736

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4737  AAAAATGGTCAGAAACAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTATAGTCAATAATAATCG  4810

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4811  AATGGTACATTTAAAAATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGATAAATGCTTGAGGTGA  4884

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4885  TGGATACCCCATTTACCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTATCCATATACCCCATGAA  4958

Query  220  --------------------------------------------  219
                                                        
Sbjct 4959  TAAATGTATATACCTACTATGCACCTACAAAAATTAAAATAATA  5002

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