Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_935293.2
Aligned Length:
5014
Identities:
192
Gaps:
4795

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGGGGGTTGCCCAGTGGAAACAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTGAAGAATTTGTGTGGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTCAGTCTCCCGAATAGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTTAGTAGAGACAGAGTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTCTCACAAAGTGCTGGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAATACTTGTGAGAGTGAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTTGGTGTGGGGACATAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAAGTGACAACACAAATA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGGTATGCAGTGCTGCAGAGGTTTGGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGGTTGGATCAGGTTGGGGTGTGGAGGGCGGGGAGGGAAGGAGTTCAGAGAACCTTTCCTGAAGAAGGTAGCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCTGAGCGGACATCAAAGGTGAGCAGAAGCTGCGTAAGCTGAGAGAGGGTGGAAAAGAGGGCGTTTCCAGTGGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGGACTTAGCACAAGCAAAGACAACAAACCCTTGGGCCTGTAAAGGAAACAATAAATTAATTTGTCTAGAATGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GACAGTAGTGGAATATGAGATTCAACGACTGTCCTAGCTCTTTTTGAAAATTTTGCTTTCTACATAGTTACTTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATAGCTCCAATCTGGAAACAACCCAAATGTTCATTAACAGAAGACTGGATAAACAAATTGTGGCATATCCAGAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AATAGAATGCTACTGAACAATTAACAAAACTGTAGACACAACATCAACAAACCTAAAAATAATTATGTGTCATG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AATGAAACCAGAAAAAAGAATAAATACTTCATGATCTCATTTATAAGAAAATTCTAGATAAGGCACAAACTAAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTACAGTTAATATGTAGTTTCCAGGGGATTCGTTATCAGTAGTGCAGAGAGAAGAGGATTATAACAGACATGAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTAATGTGTTGGGTGATAGATATGTTCATTATCATAGCTATAGAGATGGTTTGAAATATATGTACATGAAAAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTATCAAACTGTATACTTGCAACATGAGTTTTATTGCATGTCAATTATACTGCAATAAGGCGTTTAAAAAAGGG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTCTACATAAAAATACAAATCCACTTATTTTAGAAAACCAGAAGTTTTGGCAACCGTATGCTGATTCTGCCATC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTGGCAAAAGTCAGCAGGCAATGAAGGCTATTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATGGCTGGACTCTATCTACCTCCCTGTAATCTCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACCATAAAGACTATGGAAATCCAATAATCTTTAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAGATTTGGAATTTATAATTTGTACACCCTGATT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGGAAGGGACACATTCTCCCAGTTTACTGCAATA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAATGCCTTTTAAATTTTCCCAGCAAGCCTTGTAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCTTCCTGCCTGCTTTCCCTCTGAGCATACAAAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGAGCCTAATTATTTCTCAACTTATCCCTAAACA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGACAGGTCCTGGGCTGGGAATCCAGGAGACTGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCCATGAAGAAGGGAACCTAATAAGTAAGCTGCC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTATAACCAGCCAGTGAGAAGGGAATGAGGTCCC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAGAGAGAGCCTGGAGGTCTCACTTTCTTGAGCA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGATGGCTTCTGGCACAGGTATTGGATGTGACAT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTACCTCCTGAAAGCTCCCTCCATACCTGGCACTA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTCGCTTCTGTCTGATGACTCCCTGCAAAAAGGC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACAAGGATATAACACATCCCCTGCTCTCCTAAGG  3404

Query    1  -------------------------------------------------------------------ATGG---  4
                                                                               .|||   
Sbjct 3405  AAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGATTTTTTTTTGTTTGTTTGTTTTTTTTGGTTT  3478

Query    5  ----------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCC  68
                      |||||||.||||||.|||||.||||||||.|||||||.|||||.||||.|||||||||||||||
Sbjct 3479  GTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAACCTCTGCC  3552

Query   69  TCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGG  142
            |||.|.|.|||||.||||||..||||||.||||||.||||||||||||||||||||||..||.||||.||||.|
Sbjct 3553  TCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAG  3626

Query  143  CTAA-----TTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG  211
            ||||     ||||||||||||||||.|||||||||||||||..|||||||||.|||||||||||.||||.||||
Sbjct 3627  CTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGGTCAGGCTGGTCTTGAACCCCTG  3700

Query  212  ACCTCAAG------------------------------------------------------------------  219
            ||||||||                                                                  
Sbjct 3701  ACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGCCACTGCGCCTGGCCTCA  3774

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3775  ATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGCATAAAGCCTTACTTCAGTGTCAACTTTTGGT  3848

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3849  GCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTATGCATTCATAAGGCTTTTGCAGGGTGAACTTT  3922

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3923  CTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCACATTGTCCCCACTCATAAAACCTTTCTGTGT  3996

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3997  TGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTAGGATTTCCCACACCTGCTGTACACATAAGGG  4070

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4071  CTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGCTCTGGCTAAAGGATTTCCCACATTCTTTGCA  4144

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4145  CTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCAAGTCCATATTTGGAGCTCAAAGATTTCTTAC  4218

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4219  GCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGGTTCCTCAAAAAACTAAAAATAGAGCTACCAT  4292

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4293  ATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAAGAAATCAGTACATTGAAGAGATATCTGCCCT  4366

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4367  CCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGAAGTAACCCAAATGTCCATCAACAGACAAATG  4440

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4441  GATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCAGCCATAAAAAAGAATGAGATCTTGTCATCTG  4514

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4515  CAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAATAATCCAGGCACAGAAAGAAAACATTGCATG  4588

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4589  TTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACTCATGGAGATAGAGAGTAGAAGGATGGTTACC  4662

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4663  AGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGGGTGTTTAATGTGTCCAAAAAATGGTCAGAAA  4736

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4737  CAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTATAGTCAATAATAATCGAATGGTACATTTAAA  4810

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4811  AATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGATAAATGCTTGAGGTGATGGATACCCCATTTA  4884

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4885  CCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTATCCATATACCCCATGAATAAATGTATATACCT  4958

Query  220  --------------------------------------------------------  219
                                                                    
Sbjct 4959  ACTATGCACCTACAAAAATTAAAATAATAAAAAAAAGGATTCCCCATATTTGCTAC  5014

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