Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_938936.2
Aligned Length:
4176
Identities:
190
Gaps:
3960

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTCCGGACCACCTCGCAGCGCCGCGTCCTTAGGGGCGGGCTCGGGGGGCACCACCCTCGAGGGGCGGAACCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGGGGCGGTGGCGTGGATCCGGAGGTACCTGGTTTCTGAGCAAGATGCTTGCATGAAAGATTCAATCTAAGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAATGCAAAAATATTGTGAAAGCAGCAGGATCAGCTAGCCTTCCAGTTGGCTTCTTAAATGCTGCATTGAAAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATGAAACAGAACGGATGTGAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCAAGAAGATACCAAATCATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGGATGTGTTCAACTTAGAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCTTAAGTAGAGTGTAAAGTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAACCCGAAAATCTCAGTGGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTGGTCTCCTGCTTGGCTTTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAGAGCATTTTGTTTCCAGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAATGATACATCACTTTAGCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGGATATGGAACACTTGGATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTCTATATCCCTTATCTTCTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGTTGGTATTCTTCTTTTTTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTTAGTAGCATCATGTATCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACTGTATTTGATTTTTTAAAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCAGATGTGTTGATAAGGATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGTTTAATTATCTGACACAAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CATGTATACTCACTTTTTCTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTAGTTCCAAGTGTTGCTTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCATAGACTTGTCGTTATGACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATTAGATTATATAGTCTGTGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GATGTTAGATCCAGGCAAATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GACATGTTTGGTTGGGGGTGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGCTGGATATAGTTAGAAGGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCCAAGTTTTGGCCTGAGTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGCTGTCATAAAATAAAATGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCTGAGATAGAGTTCAGATGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GACACCTGGCATGGGCAAGGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAAAATTTGGCTACAAATGTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTTGTAATGTGGTAACTGCTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTA  2294

Query    1  ------------------------------------------------------------------AT------  2
                                                                              ||      
Sbjct 2295  CCTTCATTCATTTAAAGAAAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGA  2368

Query    3  GG---AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCG  73
            ||   |||||||.|.|||.||||||.||||.|||||||||||.|||||||||||||||||||||||||||||||
Sbjct 2369  GGCACAGTCTCAGTTTGTTGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCG  2442

Query   74  AGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAAT  147
            .|.||||||||||||||||||||.||||||..|||||||||||.|||||.||..|.|.||||..||||.|.|| 
Sbjct 2443  GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAA-  2515

Query  148  TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--  219
              ||||||||.||||.||.||||..|||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 2516  --TTTTTGTACTTTTGGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGG  2587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2588  ACCTGACTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATT  2661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2662  AGGTACTTGCTGTATGTGGTGAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTAC  2735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2736  TTCAATACATCAAATCCTACTTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGT  2809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2810  TTTGAAATGTCTGCAAACTCATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAA  2883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2884  CTTCAGAGGCCATTTCATGAAAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCT  2957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2958  CTGGGGAAAGCCAGCTGCCATATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGG  3031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3032  CTGATGGACACATGGGTGACCTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTC  3105

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3106  ATGAAAGATCCTGAGCTAGAAGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGT  3179

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3180  GAGATAAGCACCTGTGCTTTTTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAAC  3253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3254  TCATAATCTCACCACATTAAAAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAAC  3327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3328  TTCCCACCATCCCTGATCTTTAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATG  3401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3402  CAATATATGTGTAAACCCTTTAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATA  3475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3476  TCTTGAAGGTGTCTTCATATCAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGT  3549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3550  ACCATATTTCTTTTACCAGTCCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATA  3623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3624  TGGTGATAAACATTTTCATGCTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTT  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  GTATATGCATTTAAAGTTGATGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGA  3771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3772  GAATGCTATATCCCCACAAACCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTT  3845

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3846  TTCTTCTTTTGAGAATTGCCATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAG  3919

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3920  CATTTCTGAGGCTTCTTGTGCCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTA  3993

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3994  CTATTATTATCTGCTTATGGCTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACA  4067

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4068  ACTAGGAAGGGTGGAGCCAGGATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATG  4141

Query  220  --------------------------------  219
                                            
Sbjct 4142  GATGACCTGTTTACATCCTTTCTCATTTTTAA  4173

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