Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
XR_942832.2
Aligned Length:
3668
Identities:
185
Gaps:
3457

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTATTATCTTCAGAGATTAAGGCAGTATTTTCTGAGCAGATTTAACAAAAATGATCTTGCCTAATTAAAAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCACTGGGTAGTGTTCGTCAGAGAGCCCGGCTGCTGGCTGTTATTTCCTGTGTCAAACTTCCTCTTACCCCTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGTTTGTACATGAGACAGTTAGAGGGGCCGTGTCTCAGCTCTGCCACCCACGTCTCAGCCCACTCGCACTCGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTGGACAGAATGTTAAAGAAAACTCAGAACATAAATCTGGGTGGGGAGAGCTAAGAACTCTACATTATGTTCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTCGTTTCTTTTTTTATAGCTCATCATAACCTATGCCTATTTTTCCCTTTGAATCTTTCATAGATTCCAGTCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TAGGCCAGATTCAAGACTCAACCCCAATTATTGGGTATAAGAGACACAATAGGTATTCAATAAACATCGGTTGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTGAATTAAATGGGATTGAAATTGGCCCCACTAAGACATAGATCTCTTAGGGGTTGTTTGGCTGCAAAAACCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAATCTAGATGACTAGCTAAAGCTAAACAAGAAAATTTACTGTAAGGATACATGGATTTCTTTATGAGAAAAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAAAAGGAAGTGGAAACTTACCAGGAATGAAAGAGAATGCTGTTTATAATTTTTAGGGAGCATTGAGGTCAAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GATCTGCCTCACTATCCTTCCACCTTTGGCTCTGCTTGCAGTGGCTCTGGTTCTATCCATGCTTTTACTAAGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGCAAATTCTGTAAAGCAGGAAACTACAAAAACGTTACAAAAGGCTCTGTCAAAAGATTCTTCAAGTGATTAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GATAGCACACTCTGCATAGGAAATGAAGCCCTCGGAGAGATTTGAAGAAGCCCTTGGAGAGATTTGAGATATCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTAACGGAGAAAGAATTGACCTTCATTATCTCAGGAAGGCTTTTGACATAAAAGAGAAAGAGAAGAAACTGATT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACTTAAAGAGGAGAGAGAGCTGTAAAGAGAACTACGAGGATGAGCATCAGGCTTAAAGTGGCTTAATTTATAAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CGGATAATTTAAAAATAGAATTGGAACATTAAGCCTTAATATGACCTATACTCCTCGCAATCCAGAAGTGAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAGAAATGTGGACATGAGAGGGGCACAGAGGAAGACTACCTGAAGACACACAGAGAGAAGGTGACCACGTGGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGAGTGGAGCATCTACAAACCAACACACATACCAAGGATTGCTGGCAAGTATCACCAGAAGCTAGAAGAGGCAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAAAGGATTCTCCCCAAAGCTGTCAGCAAAAACACAGCACTGATGGTACCTTGATTTCAGACTTTTAGCCCCGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AACTGTGAGAGAGTAAATTTCTGTTGTTTTAGGTGACCTGTTTTTTGGAATTTGTTATGTCAACTGTAGGAAAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGATATTGTACAACGATTGGGGCATGACTTTGCAATGGTTTACCTGCTCTCAGATGAAAATTTTTTTTTTTTGT  1480

Query    1  -----------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATG--ATCTCGGCTCACTGCAAC  61
                       |||||||||...|||||.||||||.|..|||||.|||||  ||  ||||.|||||||||||||
Sbjct 1481  TTTTTTTTTAGATGGAGTCTTGCTCTGTTGCCCAGGCCAGAGTGTAGTGG--TGCCATCTTGGCTCACTGCAAC  1552

Query   62  CTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCA  135
            ||||.||||.||.|.||||||||||||||||||||.||||||.||||||||||||..||||   |||.|.||||
Sbjct 1553  CTCTACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAG---CACACCACCA  1623

Query  136  TGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC  209
            .|||.||..||   |||||||||||||||||||||..||||||||||||||||||||||||||||||.||||||
Sbjct 1624  GGCCTGGTGAA---TTTTTGTATTTTTAGTAGAGAAAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCC  1694

Query  210  TGACCTCAAG----------------------------------------------------------------  219
            ||||||||||                                                                
Sbjct 1695  TGACCTCAAGTGATCTGCTCGCCTCAGCTTCCCAAAGTGCTGGGATTACAGGTGTGGGCCACCACACCCTGTCT  1768

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1769  CAGATGAAAGGTTAATATAATTAAGGAACATCTTTTTTGTTTTTTTTTTCAGAAATTGGAATGGGGGAGTAGCT  1842

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1843  GAACAGAAAAGTCCATCTTGTTCAATTCCCACAAGAACATTTCTTTGCAATATTATTGGCAGGAATATGCAGTA  1916

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1917  AAGTTCTAATAACTATTTACTCCTTTCTTTGAAACTCTATTCAGTTATAATGTGTCCTGTAAAAAGTATGACAC  1990

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1991  TGATTTCATAGTACCAATTTTAGCCTAATACATATTTAAATGATTCCCAATGTATAAAGATATTTTAGTAATAA  2064

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2065  GAAATTATTTAAGGATCCCAAACATCACAATAAACATAAAGCCTAGTTTTAGGTTGCAAAAAAGTATCAAACTT  2138

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2139  TATAAGTTTTAGTGCAAATTAAGAGAAATTACATTCTAACTACACTAATAACTGAAAACTTCATATTAGGCAAA  2212

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2213  TAATGTCTTCAACTACTCAAATTATAGGAGCCCACTTCAAGAACCTCAGTAAGAAGAAATTTTGAATGGTTTAA  2286

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2287  AAATAATAAATGCCATGACATTTTAAATGGAAATTTGGCATATTTTTGAGATAAATATGATTGGATACATGTGT  2360

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2361  GTGCCATTCTTTTATCTCTTCTTACTTTTACTGTATCTCTACTTTAATGATGACAATAATATGGCTACAGACAT  2434

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2435  GAAATGGTTTATCTTTCTTCTTTTCTTTCACTCTTTCATTTAAAGCATTTATATTATTTTTTATTGATGTCAAT  2508

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2509  GTTAACATTTTGGCATCCTTCCCAAGTATATTGCAAGAAATACATCAATAAAAACTTAAATTTAAAAAATATGT  2582

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2583  AGTCTGGGGCCAGATAATAATGGCATATTTCTTTAAAATTAGGTATAAAGGAGTACAGACGAGGTCAAAATTCT  2656

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2657  AAAATTGGAATCTTGCCATTAACAAACAGAACTGACATTCTGATACTTCTATCTGCTGTGGACGTGACACAGAG  2730

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2731  ACTTACCAAAGCCAAGATACATTTATTCAAGGAGGAGCAACTTGCCTTTATACTTATACCTTTGTTAATAACTT  2804

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2805  GTTTAAAGCAATCCTTTGTTTTCTTTGCATATTTGAATTGATTTGCTAAAAGTTATCTACTGTTAAATAAGCAA  2878

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2879  AACTCAAAATTTTCAAGCATATGGGACTTGTTCAGAATCAGTTTTTAGTTTCTTTTTCAGGATTTTGTACAAGT  2952

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2953  TGCAAGAGAAGAGACACAAAATTATCTTATTAATTCTATTGCAATATGGAGATACATTTTAAACAAATGGAAAT  3026

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3027  AATCAATATTAGTATTATCTGTATATTTGTGTGTGTGTGTGTTGATCTGACTATATTTTTCTTCAAAGGGAAAT  3100

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3101  CACAAAGGCCAAGTGTGTTTATCAGGTAACTCACCTTAAGAAAACTTGTACTATGTGAAAAGTCAATTTCTTTA  3174

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3175  AAAACTGTCACCAACTCAACCCTGGTTTGTAAGTAGAAAAAACTATCAATTATTTTTTAACAATAGTAATACTC  3248

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3249  CCAAGGTATATACTTCTGCCACAAAAAATTAAGAATAGTTTACTTAGCACGTTTTGTCATTGTGGAAATCATTG  3322

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3323  AGAAAAATCACAGTGGAAAGTTATTTGAAAAGGCATAACTGTCATTAGAAAGAAATTAAGAATAAAGAAGGCAG  3396

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3397  GCCTGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCTCCTGAGGTCGGG  3470

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3471  AGTTCAAGACCAGCCTGACTAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCGGGGTGGTGGC  3544

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3545  ACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGATGGAGGTTGCGG  3618

Query  220  ------------------------------------------  219
                                                      
Sbjct 3619  TGAGCTGAGATGGTGCCATTGCACTCCAGCCTGGGCAAAAAG  3660

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.