Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12786
- Subject:
- NM_001003795.3
- Aligned Length:
- 2878
- Identities:
- 1422
- Gaps:
- 1415
Alignment
Query 1 ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATT 74
Query 75 CCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGT 148
Query 149 ACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACGGATTTTCAGAAA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACGGATTTTCAGAAA 222
Query 223 GATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTGTGAACGGGATGCAGGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTGTGAACGGGATGCAGGT 296
Query 297 CCACTCGGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTTTTGTTATGGTAAAGCCTTAG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCACTCGGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTTTTGTTATGGTAAAGCCTTAG 370
Query 371 GGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTT 444
Query 445 CCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAACCCTGAAATGGATTTTGGAGAACAAAGC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAACCCTGAAATGGATTTTGGAGAACAAAGC 518
Query 519 AGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGAGAGTCAGCTGGGTGGCCCTGGGATGGTAACAG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGAGAGTCAGCTGGGTGGCCCTGGGATGGTAACAG 592
Query 593 ATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGCGGCCCCATCAATGTGAAAACTGAACCCATGGAAGAT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGCGGCCCCATCAATGTGAAAACTGAACCCATGGAAGAT 666
Query 667 TCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAGTCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAGTCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAA 740
Query 741 TATGCAAGGAAGCCACCCTTCTTCCACAAGCAATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TATGCAAGGAAGCCACCCTTCTTCCACAAGCAATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTC 814
Query 815 CGCTGGTCCCTTCAGAAGAACCAAATGAGGACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CGCTGGTCCCTTCAGAAGAACCAAATGAGGACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCC 888
Query 889 AGTGTTACAAATTCTGCAGCAGGTGTTGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGTGTTACAAATTCTGCAGCAGGTGTTGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGA 962
Query 963 AAGATTATCAAGCATTGAAAAGATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGATTATCAAGCATTGAAAAGATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTG 1036
Query 1037 AAGCAATTGGCGTGGATTTCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAGCAATTGGCGTGGATTTCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATT 1110
Query 1111 GATGGCATGCCCCCGGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATGGCATGCCCCCGGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGA 1184
Query 1185 GGCAGCTGAGTTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATGGACTTTTGGAGG 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |.|||..
Sbjct 1185 GGCAGCTGAGTTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATG-----TGGGAAA 1253
Query 1259 CCG-------GGGCAGGAGGATTGCTTGAGGCCGGGAGTTTGA---------GGCCAG------------CCTG 1304
.|| |..|||||| |||||.|.||||.| ||..|| |.||
Sbjct 1254 ACGCAAGATAGACCAGGAG----------GGCCGTGTGTTTCAAGAAAAGTGGGAGAGAGCGTATTTCTTCGTG 1317
Query 1305 G--------------GCAACATGGC-------------AAGACCCCATCTC----TACAAAAAATTTAA---AA 1344
| .|||||||.| ||| |||.|| |.||||.|||.||| ||
Sbjct 1318 GAAGTACAGAATATTCCAACATGTCTCATATGCAAACAAAG----CATGTCTGTGTCCAAAGAATATAACCTAA 1387
Query 1345 ------------------------------ATT----------------------------------------- 1347
|||
Sbjct 1388 GACGCCACTATCAAACCAATCACAGCAAGCATTATGACCAGTATACGGAAAGAATGCGTGACGAGAAGCTTCAC 1461
Query 1348 -AGCTGGAAACAGTGGCTC-------------------------ACACC---TGTAGCCCCAGC---------T 1383
|||||.|||.|| ||||| ||||| ||| |||.||| |
Sbjct 1462 GAGCTGAAAAAAG-GGCTCAGGAAGTATCTCTTAGGCTCGTCAGACACCGAGTGT--CCCGAGCAAAAACAAGT 1532
Query 1384 ACTTG-------------------------------GCAGGCTGAAGCGGGAGGA--TCGCT-TGAACTCA--G 1421
..||| ||||.|||.| ||||| |.||| .|||||.| |
Sbjct 1533 GTTTGCAAACCCAAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTA----GAGGACCTAGCTGGGAACTTATGG 1602
Query 1422 GAG------------------------TTTGAGACA---------GCA------GAGAAC-----CATAATTGC 1451
||| ||||.|.|| ||| ||||.| .||||.|
Sbjct 1603 GAGAAGTTACGTGAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGATCACGGATATAAAT-- 1674
Query 1452 AATACTGCACTCCAG---------------CCTGG-------------------GTGACAGAACAA------GA 1485
||||| ||| |||| |.||| |||.|.|||.|| ||
Sbjct 1675 AATAC--CAC-CCAGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAAGAACTTCTGGA 1745
Query 1486 CCCTGTCTC----------------------------------------------------------------- 1494
|.|.||..|
Sbjct 1746 CACGGTGCCCATGACGGGTACAAAATCTGGCAACGAGATCTTTTTGCGTGTTGAGAAGAGCCTGAAAAAGTTCT 1819
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 1820 GTATCAACTGGTCGAGATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCAATAACGGGCTT 1893
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 1894 GTCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGTTGTATAATTCA 1967
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 1968 TCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTCCGTGAACTGGA 2041
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2042 TATGCTCCCGGGGACTGAACCACAGCGAGTTCACAACCTTGCTCTATGAGCTGGACAGCCAGTATGGTAGCCTC 2115
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2116 CTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTTTCGAATCCTTGGAAGAAAT 2189
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2190 CGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCATAGATTGGATCCGAGACCTGGCCT 2263
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2264 TCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTCCAAGGACACTCCCAAATCGTCACGCAG 2337
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2338 ATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCTGGGAGACTCATTTGACGAGGAATAATCTGGC 2411
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2412 CCACTTTCCCACCCTGAAATTGGTTTCCAGAAATGAAAGCGATGGCCTGAACTACATTCCCAAAATCGCGGAAC 2485
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2486 TCAAGACCGAATTCCAGAAAAGGCTGTCTGATTTCAAACTCTACGAAAGCGAACTGACTCTGTTCAGCTCCCCG 2559
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2560 TTCTCCACGAAGATCGACAGTGTGCACGAGGAGCTCCAGATGGAGGTTATCGACCTGCAATGCAACACGGTCCT 2633
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2634 GAAGACGAAATACGACAAGGTGGGAATACCAGAATTCTACAAGTACCTCTGGGGTAGCTACCCGAAATACAAGC 2707
Query 1495 -------------------------------------------------------------------------- 1494
Sbjct 2708 ACCATTGCGCAAAGATTCTTTCCATGTTCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCATTATGAAACTG 2781
Query 1495 ------------------------------------------------------------------ 1494
Sbjct 2782 AGCAAAACAAAATACTGCTCCCAGTTAAAGGATTCCCAGTGGGATTCTGTACTCCACATCGCAACG 2847
