Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12833
- Subject:
- NM_001322362.2
- Aligned Length:
- 1600
- Identities:
- 1344
- Gaps:
- 248
Alignment
Query 1 ---------------------------------ATGCTTTTCGGAATATTCGCTTGGGGGCTCCTCTTTTTGCT 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACCACACTTGAAGCAATGGAGACAACGAATGCTTTTCGGAATATTCGCTTGGGGGCTCCTCTTTTTGCT 74
Query 42 GATTTTCATCTACTTCACCGACAGCAACCCCGCTGAGCCTGTACCCAGCTCCCTCTCCTTCCTGGAGACCAGGA 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GATTTTCATCTACTTCACCGACAGCAACCCCGCTGAGCCTGTACCCAGCTCCCTCTCCTTCCTGGAGACCAGGA 148
Query 116 GGCTCCTGCCGGTGCAGGGGAAGCAGCGGGCCATCATGGGCGCCGCACATGAGCCCTCCCCGCCTGGGGGCCTG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGCTCCTGCCGGTGCAGGGGAAGCAGCGGGCCATCATGGGCGCCGCACATGAGCCCTCCCCGCCTGGGGGCCTG 222
Query 190 GACGCACGCCAGGCGCTGCCCCGCGCCCACCCAGCCGGTTCCTTTCATGCGGGGCCTGGAGACCTGCAGAAATG 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GACGCACGCCAGGCGCTGCCCCGCGCCCACCCAGCCGGTTCCTTTCATGCGGGGCCTGGAGACCTGCAGAAATG 296
Query 264 GGCCCAGTCCCAAGATGGGTTTGAACATAAAGAGTTTTTTTCATCCCAGGTGGGGAGAAAATCTCAAAGTGCTT 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGCCCAGTCCCAAGATGGGTTTGAACATAAAGAGTTTTTTTCATCCCAGGTGGGGAGAAAATCTCAAAGTGCTT 370
Query 338 TCTACCCGGAGGATGACGACTACTTTTTTGCTGCTGGTCAGCCAGGGTGGCACAGCCACACTCAGGGGACATTG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTACCCGGAGGATGACGACTACTTTTTTGCTGCTGGTCAGCCAGGGTGGCACAGCCACACTCAGGGGACATTG 444
Query 412 GGATTCCCTTCCCCCGGGGAGCCAGGCCCACGGGAGGGGGCTTTTCCGGCTGCACAGGTCCAGAGGAGGCGGGT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGATTCCCTTCCCCCGGGGAGCCAGGCCCACGGGAGGGGGCTTTTCCGGCTGCACAGGTCCAGAGGAGGCGGGT 518
Query 486 GAAGAAGAGGCACCGGAGGCAGAGAAGGAGCCACGTGTTGGAGGAGGGCGACGACGGCGACAGGCTGTACTCCT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAAGAAGAGGCACCGGAGGCAGAGAAGGAGCCACGTGTTGGAGGAGGGCGACGACGGCGACAGGCTGTACTCCT 592
Query 560 CCATGTCCAGGGCCTTCCTGTACCGGCTCTGGAAGGGGAACGTCTCTTCCAAAATGCTGAACCCGCGCCTGCAG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCATGTCCAGGGCCTTCCTGTACCGGCTCTGGAAGGGGAACGTCTCTTCCAAAATGCTGAACCCGCGCCTGCAG 666
Query 634 AAGGCGATGAAGGATTACCTGACCGCCAACAAGCACGGGGTGCGCTTCCGCGGGAAGCGGGAGGCCGGGCTGAG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGGCGATGAAGGATTACCTGACCGCCAACAAGCACGGGGTGCGCTTCCGCGGGAAGCGGGAGGCCGGGCTGAG 740
Query 708 CAGGGCACAGCTGCTGTGCCAGCTGCGGAGCCGCGCGCGCGTGCGGACGCTGGACGGCACCGAGGCGCCCTTTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAGGGCACAGCTGCTGTGCCAGCTGCGGAGCCGCGCGCGCGTGCGGACGCTGGACGGCACCGAGGCGCCCTTTT 814
Query 782 CTGCGCTGGGCTGGCGGCGCCTGGTGCCCGCCGTGCCCCTGAGCCAGCTGCACCCCCGCGGCCTGCGCAGCTGC 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGCGCTGGGCTGGCGGCGCCTGGTGCCCGCCGTGCCCCTGAGCCAGCTGCACCCCCGCGGCCTGCGCAGCTGC 888
Query 856 GCTGTCGTCATGTCTGCAGGCGCAATCCTCAACTCTTCCTTGGGCGAGGAAATAGATTCTCATGATGCGGTTTT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCTGTCGTCATGTCTGCAGGCGCAATCCTCAACTCTTCCTTGGGCGAGGAAATAGATTCTCATGATGCGGTTTT 962
Query 930 GAGATTTAACTCTGCTCCTACACGTGGTTATGAGAAAGATGTTGGGAATAAAACCACCATACGCATCATTAATT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAGATTTAACTCTGCTCCTACACGTGGTTATGAGAAAGATGTTGGGAATAAAACCACCATACGCATCATTAATT 1036
Query 1004 CGCAGATTCTGACCAACCCCAGCCATCACTTCATTGACAGTTCACTGTATAAAGACGTCATTTTGGTGGCCTGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGCAGATTCTGACCAACCCCAGCCATCACTTCATTGACAGTTCACTGTATAAAGACGTCATTTTGGTGGCCTGG 1110
Query 1078 GACCCTGCCCCATATTCCGCAAATCTTAACCTGTGGTACAAAAAACCGGATTACAACCTGTTCACTCCATATAT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GACCCTGCCCCATATTCCGCAAATCTTAACCTGTGGTACAAAAAACCGGATTACAACCTGTTCACTCCATATAT 1184
Query 1152 TCAGCATCGTCAGAGAAACCCAAATCAGCCATTTTACATTCTTCATCCTAAATTTATATGGCAGCTCTGGGATA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCAGCATCGTCAGAGAAACCCAAATCAGCCATTTTACATTCTTCATCCTAAATTTATATGGCAGCTCTGGGATA 1258
Query 1226 TTATCCAGGAGAACACTAAAGAGAAGATTCAACCAAACCCACCATCTTCTGGTTTCATTGG----CTCATTTGT 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1259 TTATCCAGGAGAACACTAAAGAGAAGATTCAACCAAACCCACCATCTTCTGGTTTCATTGGAATCCTCAT---- 1328
Query 1296 AAAAAT--TGGCCATAT-CAGAG-CTTGCA-GTG--------------AGCCG------AGATCACGCGA-CTG 1343
||| ||.||||.| ||||| ..|||| ||| |.||| || ||| || |||
Sbjct 1329 ---AATGATGTCCATGTGCAGAGAGGTGCACGTGTATGAATATATCCCATCCGTGCGGCAG---ACG-GAGCTG 1395
Query 1344 ---CACT----CCAGC----CTGGACGACAGAG----------------------------------------- 1365
|||| |.||| || |||||..||
Sbjct 1396 TGCCACTACCACGAGCTGTACT--ACGACGCAGCCTGCACCCTCGGGGCGTACCACCCACTACTCTATGAGAAG 1467
Query 1366 -------------------------------------------------------------------------- 1365
Sbjct 1468 CTCCTGGTGCAGCGCCTGAACATGGGCACGCAGGGGGATTTGCATCGCAAGGGCAAGGTGGTTCTTCCCGGCTT 1541
Query 1366 ---------------------------------------------- 1365
Sbjct 1542 CCAGGCGGTGCACTGCCCTGCACCAAGTCCAGTCATTCCACACTCT 1587