Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12837
- Subject:
- NR_136696.1
- Aligned Length:
- 3445
- Identities:
- 1433
- Gaps:
- 2011
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGTAGCGGCGTGGCCAGTGACAGCCGGCCCCCGTCACGTGGTCGGGCCCACTCCAATGGGCGGCGCCGGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACTTGCTGTTCCCGGCGGCCCGTGCGTCGGCGGTGGTTGGGTGGTAAGATGGCGGCTGTGAGTCTGCGGCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGACTTGGTGTGGGGGAAACTCGGCCGATATCCTCCTTGGCCAGGAAAGATTGTTAATCCACCAAAGGACTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGAAACCTCGCGGAAAGAAATGCTTCTTTGTGAAATTTTTTGGAACAGAAGATCATGCCTGGATCAAAGTGGA 296
Query 1 ----------------------------------ATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGG 40
||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGCTGAAGCCATATCATGCTCATAAAGAGGAAATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGG 370
Query 41 TAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGAC 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGAC 444
Query 115 AAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTC 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTC 518
Query 189 TGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCA 592
Query 263 AATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTC 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTC 666
Query 337 ACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGC 740
Query 411 AAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCT 814
Query 485 GTTACCAGGCAATCACGAAGAAGTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGAC 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTTACCAGGCAATCACGAAGAAGTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGAC 888
Query 559 AGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAG 962
Query 633 TGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATT 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAA------- 1029
Query 707 TGTTCATCCAGGAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 -----------GAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCC 1092
Query 781 TGCGTGTCGGATCCCAAGGCGGCCAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TGCGTGTCGGATCCCAAGGCGGCCAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGG 1166
Query 855 GAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 GAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGG 1240
Query 929 GGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCG 1314
Query 1003 GCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGG 1388
Query 1077 TGAAGTGGGCAATGCAGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCG 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TGAAGTGGGCAATGCAGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCG 1462
Query 1151 AGGGGCTGACCCTGGCCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AGGGGCTGACCCTGGCCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTG 1536
Query 1225 GCCAGCATCTTCCTGGACCAGAAGTGCCAAAATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 GCCAGCATCTTCCTGGACCAGAAGTGCCAAAATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATA 1610
Query 1299 CATTCAGAAGGATCTCCGCTTAGCCATTGCGCTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 CATTCAGAAGGATCTCCGCTTAGCCATTGCGCTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAG 1684
Query 1373 CAAATGAGGTGTACAAAAGAGCCAAGGCGCTGGACCAGTCCGACAACGATATGTCCGCCGTGTACCGAGCCTAC 1446
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1685 CAAATGAGGTGTACAAAAGAGCCAAGGCGCTGGACCAGTCTGACAACGATATGTCCGCCGTGTACCGAGCCTAC 1758
Query 1447 ATACAC-------------------------------------------------------------------- 1452
||||||
Sbjct 1759 ATACACTAAGCTGTCGACACCCCGCCCTCACCCCTCCAATCCCCCCTCTGACCCCCTCTTCCTCACATGGGGTC 1832
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1833 GGGGGCCTGGGAGTTCATTCTGGACCAGCCCACCTATCTCCATTTCCTTTTATACAGACTTTGAGACTTGCCAT 1906
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1907 CAGCACAGCACACAGCAGCACCCTTCCCCTGAGGCCGGTGGGGAGGGGACAAGTGTCAGCAGGATTGGCGTGTG 1980
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1981 GGAAAGCTCTTGAGCTGGGCACTGGCCCCCCGGACGAGGTGGCTGTGTGTTCACACACACACACACACACACAC 2054
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2055 ACACACACACACACAGGCTCTCGCCCCAGGATAGAAGCTGCCCAGAAACTGCTGCCTGGCTTTTTTTCTTCCGA 2128
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2129 GCTTGTCTTATCTCAAACCCCTTCCAGTCAAGGAACTAGAATCAGCAACGAGAGTTGGAAGCCTTCCCACAGCT 2202
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2203 TCCCCCAGAGCGAAGAGGCTGTAGTCATGTCCCCATCCCCCACTGGATTCCCTACAAGGAGAGGCCTTGGGCCC 2276
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2277 AGATGAGCCAGTACAGACTCCAGACAGAGGGGCCCTTGGGGCCCTCCAACCTCAGGTGATGAGCTGAGAAAGAT 2350
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2351 GTTCACGTCTAAGCGTCCAGTGTGCACCCAGCGCTCCATAGACGCCTTTGTGAACTGAAAAGAGACTGGCAGAG 2424
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2425 TCCCGAGAAGATGGGGCCCTGGCTTTCCAGGGAGTGCAGCAAGCAGCCGGCCTGCAGACCCAGCCTGACCAACG 2498
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2499 ATGAGCATTTCTTAGGCTCAGCTCTTGATACGGAAACGAGTGTCTTCACTCCAGCCAGCATCATGGTCTTCGGT 2572
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2573 GCTTCCCGGGCCCGGGGTCTGTCGGGAGGGAAGAGAACTGGGCCTGACCTACCTGAACTGACTGGCCCTCCGAG 2646
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2647 GTGGGTCTGGGACATCCTAGAGGCCCTACATTTGTCCTTGGATAGGGGACCGGGGGGGGCTTGGAATGTTGCAA 2720
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2721 AAAAAAAAGTTACCCAAGGGATGTCAGTTTTTTATCCCTCTGCATGGGTTGGATTTTCCAAAATCATAATTTGC 2794
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2795 AGAAGGAAGGCCAGCATTTACGATGCAATATGTAATTATATATAGGGTGGCCACACTAGGGCGGGGTCCTTCCC 2868
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2869 CCCTCACAGCTTTGGCCCCTTTCAGAGATTAGAAACTGGGTTAGAGGATTGCAGAAGACGAGTGGGGGGAGGGC 2942
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2943 AGGGAAGATGCCTGTCGGGTTTTTAGCACAGTTCATTTCACTGGGATTTTGAAGCATTTCTGTCTGAACACAAA 3016
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3017 GCCTGTTCTAGTCCTGGCGGAACACACTGGGGGTGGGGGCGGGGGAAGATGCGGTAATGAAACCGGTTAGTCAA 3090
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3091 TTTTGTCTTAATATTGTTGACAATTCTGTAAAGTTCCTTTTTATGAATATTTCTGTTTAAGCTATTTCACCTTT 3164
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3165 CTTTTGAAATCCTTCCCTTTTAAGGAGAAAATGTGACACTTGTGAAAAAGCTTGTAAGAAAGCCCCTCCCTTTT 3238
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3239 TTCTTTAAACCTTTAAATGACAAATCTAGGTAATTAAGGTTGTGAATTTTTATTTTTGCTTTGTTTTTAATGAA 3312
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3313 CATTTGTCTTTCAGAATAGGATTGTGTGATAATGTTTAAATGGCAAAAACAAAACATGATTTTGTGCAATTAAC 3386
Query 1453 ----------------------------------------- 1452
Sbjct 3387 AAAGCTACTGCAAGAAAAATAAAACACTTCTTGGTAACACA 3427
