Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12837
- Subject:
- NR_136699.1
- Aligned Length:
- 3445
- Identities:
- 1400
- Gaps:
- 2044
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGTAGCGGCGTGGCCAGTGACAGCCGGCCCCCGTCACGTGGTCGGGCCCACTCCAATGGGCGGCGCCGGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACTTGCTGTTCCCGGCGGCCCGTGCGTCGGCGGTGGTTGGGTGGTAAGATGGCGGCTGTGAGTCTGCGGCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGACTTGGTGTGGGGGAAACTCGGCCGATATCCTCCTTGGCCAGGAAAGATTGTTAATCCACCAAAGGACTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGAAACCTCGCGGAAAGAAATGCTTCTTTGTGAAATTTTTTGGAACAGAAGATCATGCCTGGATCAAAGTGGA 296
Query 1 ----------------------------------ATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGG 40
||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGCTGAAGCCATATCATGCTCATAAAGAGGAAATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGG 370
Query 41 TAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGAC 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGAC 444
Query 115 AAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTC 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTC 518
Query 189 TGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCA 592
Query 263 AATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTC 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTC 666
Query 337 ACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGC 740
Query 411 AAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGA------------ 802
Query 485 GTTACCAGGCAATCACGAAGAAGTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGAC 558
|||||||||||||||||||||||||||||||||||
Sbjct 803 ---------------------------------------AGGAAACTGGCTCCACCTCCATCCAGGCAGCTGAC 837
Query 559 AGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAG 911
Query 633 TGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATT 985
Query 707 TGTTCATCCAGGAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TGTTCATCCAGGAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCC 1059
Query 781 TGCGTGTCGGATCCCAAGGCGGCCAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TGCGTGTCGGATCCCAAGGCGGCCAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGG 1133
Query 855 GAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGG 1207
Query 929 GGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCG 1281
Query 1003 GCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGG 1355
Query 1077 TGAAGTGGGCAATGCAGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCG 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TGAAGTGGGCAATGCAGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCG 1429
Query 1151 AGGGGCTGACCCTGGCCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 AGGGGCTGACCCTGGCCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTG 1503
Query 1225 GCCAGCATCTTCCTGGACCAGAAGTGCCAAAATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GCCAGCATCTTCCTGGACCAGAAGTGCCAAAATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATA 1577
Query 1299 CATTCAGAAGGATCTCCGCTTAGCCATTGCGCTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 CATTCAGAAGGATCTCCGCTTAGCCATTGCGCTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAG 1651
Query 1373 CAAATGAGGTGTACAAAAGAGCCAAGGCGCTGGACCAGTCCGACAACGATATGTCCGCCGTGTACCGAGCCTAC 1446
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1652 CAAATGAGGTGTACAAAAGAGCCAAGGCGCTGGACCAGTCTGACAACGATATGTCCGCCGTGTACCGAGCCTAC 1725
Query 1447 ATACAC-------------------------------------------------------------------- 1452
||||||
Sbjct 1726 ATACACTAAGCTGTCGACACCCCGCCCTCACCCCTCCAATCCCCCCTCTGACCCCCTCTTCCTCACATGGGGTC 1799
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1800 GGGGGCCTGGGAGTTCATTCTGGACCAGCCCACCTATCTCCATTTCCTTTTATACAGACTTTGAGACTTGCCAT 1873
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1874 CAGCACAGCACACAGCAGCACCCTTCCCCTGAGGCCGGTGGGGAGGGGACAAGTGTCAGCAGGATTGGCGTGTG 1947
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1948 GGAAAGCTCTTGAGCTGGGCACTGGCCCCCCGGACGAGGTGGCTGTGTGTTCACACACACACACACACACACAC 2021
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2022 ACACACACACACACAGGCTCTCGCCCCAGGATAGAAGCTGCCCAGAAACTGCTGCCTGGCTTTTTTTCTTCCGA 2095
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2096 GCTTGTCTTATCTCAAACCCCTTCCAGTCAAGGAACTAGAATCAGCAACGAGAGTTGGAAGCCTTCCCACAGCT 2169
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2170 TCCCCCAGAGCGAAGAGGCTGTAGTCATGTCCCCATCCCCCACTGGATTCCCTACAAGGAGAGGCCTTGGGCCC 2243
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2244 AGATGAGCCAGTACAGACTCCAGACAGAGGGGCCCTTGGGGCCCTCCAACCTCAGGTGATGAGCTGAGAAAGAT 2317
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2318 GTTCACGTCTAAGCGTCCAGTGTGCACCCAGCGCTCCATAGACGCCTTTGTGAACTGAAAAGAGACTGGCAGAG 2391
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2392 TCCCGAGAAGATGGGGCCCTGGCTTTCCAGGGAGTGCAGCAAGCAGCCGGCCTGCAGACCCAGCCTGACCAACG 2465
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2466 ATGAGCATTTCTTAGGCTCAGCTCTTGATACGGAAACGAGTGTCTTCACTCCAGCCAGCATCATGGTCTTCGGT 2539
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2540 GCTTCCCGGGCCCGGGGTCTGTCGGGAGGGAAGAGAACTGGGCCTGACCTACCTGAACTGACTGGCCCTCCGAG 2613
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2614 GTGGGTCTGGGACATCCTAGAGGCCCTACATTTGTCCTTGGATAGGGGACCGGGGGGGGCTTGGAATGTTGCAA 2687
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2688 AAAAAAAAGTTACCCAAGGGATGTCAGTTTTTTATCCCTCTGCATGGGTTGGATTTTCCAAAATCATAATTTGC 2761
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2762 AGAAGGAAGGCCAGCATTTACGATGCAATATGTAATTATATATAGGGTGGCCACACTAGGGCGGGGTCCTTCCC 2835
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2836 CCCTCACAGCTTTGGCCCCTTTCAGAGATTAGAAACTGGGTTAGAGGATTGCAGAAGACGAGTGGGGGGAGGGC 2909
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2910 AGGGAAGATGCCTGTCGGGTTTTTAGCACAGTTCATTTCACTGGGATTTTGAAGCATTTCTGTCTGAACACAAA 2983
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2984 GCCTGTTCTAGTCCTGGCGGAACACACTGGGGGTGGGGGCGGGGGAAGATGCGGTAATGAAACCGGTTAGTCAA 3057
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3058 TTTTGTCTTAATATTGTTGACAATTCTGTAAAGTTCCTTTTTATGAATATTTCTGTTTAAGCTATTTCACCTTT 3131
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3132 CTTTTGAAATCCTTCCCTTTTAAGGAGAAAATGTGACACTTGTGAAAAAGCTTGTAAGAAAGCCCCTCCCTTTT 3205
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3206 TTCTTTAAACCTTTAAATGACAAATCTAGGTAATTAAGGTTGTGAATTTTTATTTTTGCTTTGTTTTTAATGAA 3279
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3280 CATTTGTCTTTCAGAATAGGATTGTGTGATAATGTTTAAATGGCAAAAACAAAACATGATTTTGTGCAATTAAC 3353
Query 1453 ----------------------------------------- 1452
Sbjct 3354 AAAGCTACTGCAAGAAAAATAAAACACTTCTTGGTAACACA 3394
