Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12840
- Subject:
- NR_149157.2
- Aligned Length:
- 4808
- Identities:
- 709
- Gaps:
- 4098
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACCTGCAGAGTGAAGAAAGCTGGTAATAGATGTCTGACAAACTAAAGAAAGACTTGTGTTACGATGCAAAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTGTTCCTGGGTGTGTCTGTGAGAGTATTGCCAAAGGAGAGCAGTGAACTGGGAAAAGCAGACCCACCTCAAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGGGTGGGCAACATCCAATCGGCTGCCAGCTAGAATAAACCAGGCAGGAGAAGATGGAAGAGCCGACTTGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATCTTCCAGCCTTCATCTTTCTCGTGTGCTGGATGCTTCCTGCCCTCAAACATCAGACTCCAGGTTCTTCGTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTTGGACTCTCGGATTTACATCAGTGGTTTACCAGGTGCTCTCAGGCCTTCAGCCACACACTGAAGGCTGAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCGGCTTCCCGACTTTTGAGATTTTGAAACTTGGACTGAGCTACTGCTGGCTTCCTTGCTTCTCAACTTACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GATGGGACTTCACCTATAGATCATGATCAGAACATAATACCTGAAAATTTGCCAGCACCAACAGACAAATGTAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTAAAATATCAGCAATGTAAAACTGAAATTAAAGAGGGCTATAAGCAGTATAGTCAGAGAAATGCAGAAAATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAAAATCAAATGTTACACATAAACAGTCTCCAAGAAACAAGATAGATGAAAAGTGTGTGCAAGATGAAGAAGCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AACACAGATGACCTTACGACTCTGGATAGGAAAGCCATCTTACAGCAAGGTTATGCAGACAACTCTTGCGATAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACAACAGAGGGCAAGAAAATTGGATGCAGTAAGTTGTCAGCATTTTTACTTATTTGGAAATTGTGGCTGCAGAG 814
Query 1 ------------------------------ATGATAGACCACTTATCTAGGGCTGTCATCAGTGATCCAGAGCA 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAAGAAACAGATTGTTGCAGAGCAAGTGATGATAGACCACTTATCTAGGGCTGTCATCAGTGATCCAGAGCA 888
Query 45 AAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCCAGATTCAAAGATGACACCTCTTCGATTTAGAA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCCAGATTCAAAGATGACACCTCTTCGATTTAGAA 962
Query 119 AAAGAACACTACATGAAACAAAGATAAGAACTCATTCTACATTAACTGAAAATGTGCTTTCTCATAAATTACAG 192
||||||||||||||||||||||
Sbjct 963 AAAGAACACTACATGAAACAAA---------------------------------------------------- 984
Query 193 TTTGATGGTAGGATCGTATCACGAACAAATGTGCTTCCTTTTATTCAAAAAAGCATTTATAGTCATCAGTGTGG 266
Sbjct 985 -------------------------------------------------------------------------- 984
Query 267 ACGAAGAAAAGGAAAACAATACCGACTTGGTGATTTTTATGTTGGTGCAACCTTGACATTTTTGAGTTCTGATC 340
|||||||||||||||||||||||||||||||
Sbjct 985 -------------------------------------------GGTGCAACCTTGACATTTTTGAGTTCTGATC 1015
Query 341 ATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCT 1089
Query 415 TTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGT 1163
Query 489 CTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAA 1237
Query 563 AATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTG 1311
Query 637 TTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGGT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGGT 1385
Query 711 TGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAAGGCCT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAAGGCCT 1459
Query 785 TTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACTGTGCAAAGAAG 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACTGTGCAAAGAAG 1533
Query 859 CATTCTCAAGTAATTTCAGGT----------------------------------------------------- 879
||||||||||||||||||||.
Sbjct 1534 CATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAACATTAAAAGTTGC 1607
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1608 CTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTTAAGTATAGGAATAGTAG 1681
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1682 ATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATTTAGTCTTTAATAATACATATGTCATCAACA 1755
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1756 CTAAGCATTTTATTGGAGAGATGATATCAATGTAAAGGATGATCAAACACTGGAATATATTTTCCTAGGACTTC 1829
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1830 CTTTATTCTGGTTTCTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTCTCAAAAATGTTGAATTTGGAAAGAGAAC 1903
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1904 TATCCAGAAAGATAGATGTAGGGGTGTGTTAGTGTTTGTGCATGTGTATGCCTGTTCACATGTCCTTACATTTG 1977
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1978 TAAAGATATCTTTTTGGTTTATTACTTATCTTGCGTATATTTTAGAGGTCATTTTTTATTAACTTCAGTAGGAA 2051
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2052 AGTTACATCTGCATCAAACAATATGGCAACATCTATTTATTAACCAAGTTTCCTGTCCTTTCACATTGTTTTTT 2125
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2126 GCTACCTCTTCCTCAGAATATATTTGCCACCATGGTCAATTTGATAAATTAGAATTGGGCCCAAAGCCAGTGAG 2199
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2200 ATAATTCAATGTGTTTTTAACACATGAAAATATTAAAGGATATGCAAGAGAAATTTTTCAAGCAGTGTGATTAT 2273
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2274 AGATGTTTTCTGTATATAGAATATTTCAAATGATGGAGGTTTACCCCATGATGCTCATTTAAATACTGACTTGT 2347
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2348 CTTTTAAATCTGTCTTCTAAATTATGTACTGTTGTTGGTTAAATAGAGCACAATGTAGTTATTCTAATGCCCAG 2421
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2422 TTGTATTTGTTCTTTTATTCTGCTTTTTAACTGTAATCCTTTTTACCAGCATACGATTGTTATTGAGCAATATG 2495
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2496 AAAGGGAAATGTTCTTTATTAAAATCAATACATTATCTTATTAAACAAAGATCCTAAAAGTATATTGTTGCATA 2569
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2570 TATGAATCCAAGGAATAGTTCAGTAATTATTGCCTAAAATGTGAAAGCATATTTTGTATCCTAAAATGAATGTA 2643
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2644 TGATATTCTAAACATCTGTTTTAGTATAACAAACAATTGAAACATTTCCTTCTAAATATATGTTATTTAATAGT 2717
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2718 TACATGTATTATAATCATTCTTTCTAAATTCTTTGCTAGTCATTTCTTCCTGGGAATACAGAGAAAAGAGACAA 2791
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2792 CTTTATGAGTTGTTTTCAACTTCATAATTTTAAATTTTCTATGTTAATATAACATAAATTAGAAAAAATAAGTG 2865
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2866 ATTCAAAATGAAAATATTTACTTTGTAGAATATGACTTTAGACATATCACTGTATCCATCTATACTTGGCAGCA 2939
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2940 ACATGAGAAGTGTGATACATGTGAACCCAACAAATTCAAAGTTGCACTTTTCAAGATGTGAGAAGGTACTAAAA 3013
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3014 CTTAATACTAAAACATGAGAGGGAAAATATGTGTAAACCTCTAGTGCTATTTTCACTGGCTAAATTCTTTATTT 3087
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3088 CTTGATTTTTTTAAAAATTAGGTTATTAAAATTAAAACAATATGCTAGAAGACATTTTGGCAGAAATAAGTCTA 3161
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3162 TAACACTATTTTTGTCACATATCTTTTTCTTGGAAAAATTTATCCAACTATAGACATCTTAAACCCTACAAATT 3235
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3236 GTTCTTGTTAAAAATGACTAATACTGGGGGTGCTCAATATGCATATAGTGTTTTTCATTGATAATTTTTATTTA 3309
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3310 GTTCTTAAGAAACCTGTTCTTAATGTTGGCATGTCACATTTTTCTGTTACTATAATCAGAAAATGTATAGTCTG 3383
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3384 TTATACTGTAAAAAAAAAAAAAAAGGGAAGCTACTTTTGGAATGTAACGTGTTAACATGACAGCATACTCTTAG 3457
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3458 TATTAATCTTAATCTTCCTAACATAAGCATTCACATGTGGTTATTTGTAGGAAATAGCTCTATTTATGAGATTT 3531
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3532 TTTTTGGTGTATTTTGTTAGAATTGGTGACACAGTAAATCATTCTGCTTTTGGATTTGCCTGACTGCCTGCATT 3605
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3606 CTTCTTTGATTTTGGTATAGTAAAATCTGTTATTTAGTGTTAAACTTAATAAAAGAGCATTTAAGAGAAGTGAC 3679
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3680 ATTTCAAACATCCACAACACAACTGACTTTTGAAATCCTATGCTTAATAGTCTTTGTAATTCTAAAAGACCTTT 3753
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3754 TGAAAATGTTAAAATATTAAATTATATGTTGTAATGCTGTTACATGAATTTTATAGTTATGTATATTTTATAGA 3827
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3828 TCTCTATGTCTTTGTAAGTTACTTGCTTGTATGCTATATAATTGCTTTCTCAGTTAACCATACTGTTTATGGAA 3901
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3902 TTGTATATACTGATTTTTCTGTTTTTATATTTTAAAAATAAAAGTTGAGAATTTTAAGGAAAAACATTTTATTA 3975
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3976 AAAAGACAAGGTATATTATATAGGAATTTTAAGCTAACTTTTAATGGAAAGGACATACATATTTGCATGATGGA 4049
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4050 GCAATCACATTATAGTTAAACATGTATGTCCCTGTTTTAAATTTTATAGTATATAAATATATGTGCTAATGAAC 4123
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4124 CAGCGACTCTGCATAGAGGCAGTCACTTAGAGTAATTAATAATCTTGATACAGCTGTAGATCATATCTTATTTT 4197
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4198 ACATATTACTTTTGACTTCCAGTTTAAGTTGTTTGTTATCAAGTATTTCAGGAGAGAATTGTGTACATTAGGCT 4271
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4272 ATGTTTACTGCAGATTATGTAACATGCTTTTATGAGATTATAGTTTGTAGTGCTTGCAAATATAAAACATGTAC 4345
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4346 CCTGATAAACTATAATCACTACTAGGTTGACCAGCAAGGACAAACATGAAAATGCTTAAAAAAAAGAAAGCGCT 4419
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4420 TAAAACAAAGAAATAGAAGGTAATGGGCATATATAAAATAAGCCAAGCAAGAGAAGAGCAAAGACAATCTGCAG 4493
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4494 GGTGGACATGGATGTATTCGTTTCTGATCATGAGAAGAGGCTCTTGTCATACATATCGTTCCATTTTTATTTTA 4567
Query 880 ------------------------------------------------------------------------ 879
Sbjct 4568 AAGTTCTATAAACTTCTGAGGTAAACTGATTTCTTGGATGTACTTAATAAAGAATAAATGTTTCATATTGGA 4639
