Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12840
- Subject:
- NR_149160.2
- Aligned Length:
- 4840
- Identities:
- 709
- Gaps:
- 4130
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACCTGCAGAGTGAAGAAAGCTGGTAATAGATGTCTGACAAACTAAAGAAAGACTTGTGTTACCACAATTCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACAGCCCGGAATATCAAGATTCATCTTTTTCACTAATTGTGGCATTCACAGATGCAAAGTATTGTTCCTGGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTCTGTGAGAGTATTGCCAAAGGAGAGCAGTGAACTGGGAAAAGCAGACCCACCTCAATGTGGGTGGGCAACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCAATCGGCTGCCAGCTAGAATAAACCAGGCAGGAGAAGATGGAAGAGCCGACTTGCTGAATCTTCCAGCCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATCTTTCTCGTGTGCTGGATGCTTCCTGCCCTCAAACATCAGACTCCAGGTTCTTCGTCTTTTGGACTCTCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTACATCAGTGGTTTACCAGGTGCTCTCAGGCCTTCAGCCACACACTGAAGGCTGAATTGTCGGCTTCCCGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTTTTGAGATTTTGAAACTTGGACTGAGCTACTGCTGGCTTCCTTGCTTCTCAACTTACAGATGGGACTTCACC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TATAGATCATGATCAGAACATAATACCTGAAAATTTGCCAGCACCAACAGACAAATGTAAACTAAAATATCAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AATGTAAAACTGAAATTAAAGAGGGCTATAAGCAGTATAGTCAGAGAAATGCAGAAAATACAAAATCAAATGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACACATAAACAGTCTCCAAGAAACAAGATAGATGAAAAGTGTGTGCAAGATGAAGAAGCCAACACAGATGACCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TACGACTCTGGATAGGAAAGCCATCTTACAGCAAGGTTATGCAGACAACTCTTGCGATAAACAACAGAGGGCAA 814
Query 1 --------------------------------------------------------------ATGATAGACCAC 12
||||||||||||
Sbjct 815 GAAAATTGGATGCAGAAATTGTGGCTGCAGAGAAGAAGAAACAGATTGTTGCAGAGCAAGTGATGATAGACCAC 888
Query 13 TTATCTAGGGCTGTCATCAGTGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCC 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTATCTAGGGCTGTCATCAGTGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCC 962
Query 87 AGATTCAAAGATGACACCTCTTCGATTTAGAAAAAGAACACTACATGAAACAAAGATAAGAACTCATTCTACAT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGATTCAAAGATGACACCTCTTCGATTTAGAAAAAGAACACTACATGAAACAAA-------------------- 1016
Query 161 TAACTGAAAATGTGCTTTCTCATAAATTACAGTTTGATGGTAGGATCGTATCACGAACAAATGTGCTTCCTTTT 234
Sbjct 1017 -------------------------------------------------------------------------- 1016
Query 235 ATTCAAAAAAGCATTTATAGTCATCAGTGTGGACGAAGAAAAGGAAAACAATACCGACTTGGTGATTTTTATGT 308
Sbjct 1017 -------------------------------------------------------------------------- 1016
Query 309 TGGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTA 382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 -GGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTA 1089
Query 383 AACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGAT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGAT 1163
Query 457 ATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAA 1237
Query 531 AAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAG 1311
Query 605 ATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGG 1385
Query 679 CTAATTCTGAATGACAATGGCAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CTAATTCTGAATGACAATGGCAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAA 1459
Query 753 TGAATACAGGAAATCATATGTTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TGAATACAGGAAATCATATGTTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTA 1533
Query 827 TAAACATAAGAAAATGTTACTGTGCAAAGAAGCATTCTCAAGTAATTTCAGGT--------------------- 879
||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1534 TAAACATAAGAAAATGTTACTGTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATC 1607
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1608 AAATCATCCTTTCTAGAAACATTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGA 1681
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1682 TTACTATGAAGGTTTAAGTATAGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGA 1755
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1756 TTTAGTCTTTAATAATACATATGTCATCAACACTAAGCATTTTATTGGAGAGATGATATCAATGTAAAGGATGA 1829
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1830 TCAAACACTGGAATATATTTTCCTAGGACTTCCTTTATTCTGGTTTCTTGTTTGTTTGTTTTGTTTTGTTTTGT 1903
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1904 TTTCTCAAAAATGTTGAATTTGGAAAGAGAACTATCCAGAAAGATAGATGTAGGGGTGTGTTAGTGTTTGTGCA 1977
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1978 TGTGTATGCCTGTTCACATGTCCTTACATTTGTAAAGATATCTTTTTGGTTTATTACTTATCTTGCGTATATTT 2051
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2052 TAGAGGTCATTTTTTATTAACTTCAGTAGGAAAGTTACATCTGCATCAAACAATATGGCAACATCTATTTATTA 2125
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2126 ACCAAGTTTCCTGTCCTTTCACATTGTTTTTTGCTACCTCTTCCTCAGAATATATTTGCCACCATGGTCAATTT 2199
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2200 GATAAATTAGAATTGGGCCCAAAGCCAGTGAGATAATTCAATGTGTTTTTAACACATGAAAATATTAAAGGATA 2273
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2274 TGCAAGAGAAATTTTTCAAGCAGTGTGATTATAGATGTTTTCTGTATATAGAATATTTCAAATGATGGAGGTTT 2347
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2348 ACCCCATGATGCTCATTTAAATACTGACTTGTCTTTTAAATCTGTCTTCTAAATTATGTACTGTTGTTGGTTAA 2421
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2422 ATAGAGCACAATGTAGTTATTCTAATGCCCAGTTGTATTTGTTCTTTTATTCTGCTTTTTAACTGTAATCCTTT 2495
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2496 TTACCAGCATACGATTGTTATTGAGCAATATGAAAGGGAAATGTTCTTTATTAAAATCAATACATTATCTTATT 2569
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2570 AAACAAAGATCCTAAAAGTATATTGTTGCATATATGAATCCAAGGAATAGTTCAGTAATTATTGCCTAAAATGT 2643
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2644 GAAAGCATATTTTGTATCCTAAAATGAATGTATGATATTCTAAACATCTGTTTTAGTATAACAAACAATTGAAA 2717
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2718 CATTTCCTTCTAAATATATGTTATTTAATAGTTACATGTATTATAATCATTCTTTCTAAATTCTTTGCTAGTCA 2791
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2792 TTTCTTCCTGGGAATACAGAGAAAAGAGACAACTTTATGAGTTGTTTTCAACTTCATAATTTTAAATTTTCTAT 2865
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2866 GTTAATATAACATAAATTAGAAAAAATAAGTGATTCAAAATGAAAATATTTACTTTGTAGAATATGACTTTAGA 2939
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2940 CATATCACTGTATCCATCTATACTTGGCAGCAACATGAGAAGTGTGATACATGTGAACCCAACAAATTCAAAGT 3013
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3014 TGCACTTTTCAAGATGTGAGAAGGTACTAAAACTTAATACTAAAACATGAGAGGGAAAATATGTGTAAACCTCT 3087
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3088 AGTGCTATTTTCACTGGCTAAATTCTTTATTTCTTGATTTTTTTAAAAATTAGGTTATTAAAATTAAAACAATA 3161
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3162 TGCTAGAAGACATTTTGGCAGAAATAAGTCTATAACACTATTTTTGTCACATATCTTTTTCTTGGAAAAATTTA 3235
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3236 TCCAACTATAGACATCTTAAACCCTACAAATTGTTCTTGTTAAAAATGACTAATACTGGGGGTGCTCAATATGC 3309
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3310 ATATAGTGTTTTTCATTGATAATTTTTATTTAGTTCTTAAGAAACCTGTTCTTAATGTTGGCATGTCACATTTT 3383
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3384 TCTGTTACTATAATCAGAAAATGTATAGTCTGTTATACTGTAAAAAAAAAAAAAAAGGGAAGCTACTTTTGGAA 3457
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3458 TGTAACGTGTTAACATGACAGCATACTCTTAGTATTAATCTTAATCTTCCTAACATAAGCATTCACATGTGGTT 3531
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3532 ATTTGTAGGAAATAGCTCTATTTATGAGATTTTTTTTGGTGTATTTTGTTAGAATTGGTGACACAGTAAATCAT 3605
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3606 TCTGCTTTTGGATTTGCCTGACTGCCTGCATTCTTCTTTGATTTTGGTATAGTAAAATCTGTTATTTAGTGTTA 3679
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3680 AACTTAATAAAAGAGCATTTAAGAGAAGTGACATTTCAAACATCCACAACACAACTGACTTTTGAAATCCTATG 3753
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3754 CTTAATAGTCTTTGTAATTCTAAAAGACCTTTTGAAAATGTTAAAATATTAAATTATATGTTGTAATGCTGTTA 3827
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3828 CATGAATTTTATAGTTATGTATATTTTATAGATCTCTATGTCTTTGTAAGTTACTTGCTTGTATGCTATATAAT 3901
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3902 TGCTTTCTCAGTTAACCATACTGTTTATGGAATTGTATATACTGATTTTTCTGTTTTTATATTTTAAAAATAAA 3975
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3976 AGTTGAGAATTTTAAGGAAAAACATTTTATTAAAAAGACAAGGTATATTATATAGGAATTTTAAGCTAACTTTT 4049
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4050 AATGGAAAGGACATACATATTTGCATGATGGAGCAATCACATTATAGTTAAACATGTATGTCCCTGTTTTAAAT 4123
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4124 TTTATAGTATATAAATATATGTGCTAATGAACCAGCGACTCTGCATAGAGGCAGTCACTTAGAGTAATTAATAA 4197
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4198 TCTTGATACAGCTGTAGATCATATCTTATTTTACATATTACTTTTGACTTCCAGTTTAAGTTGTTTGTTATCAA 4271
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4272 GTATTTCAGGAGAGAATTGTGTACATTAGGCTATGTTTACTGCAGATTATGTAACATGCTTTTATGAGATTATA 4345
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4346 GTTTGTAGTGCTTGCAAATATAAAACATGTACCCTGATAAACTATAATCACTACTAGGTTGACCAGCAAGGACA 4419
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4420 AACATGAAAATGCTTAAAAAAAAGAAAGCGCTTAAAACAAAGAAATAGAAGGTAATGGGCATATATAAAATAAG 4493
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4494 CCAAGCAAGAGAAGAGCAAAGACAATCTGCAGGGTGGACATGGATGTATTCGTTTCTGATCATGAGAAGAGGCT 4567
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4568 CTTGTCATACATATCGTTCCATTTTTATTTTAAAGTTCTATAAACTTCTGAGGTAAACTGATTTCTTGGATGTA 4641
Query 880 ------------------------------ 879
Sbjct 4642 CTTAATAAAGAATAAATGTTTCATATTGGA 4671