Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12944
Subject:
XR_001737528.1
Aligned Length:
4384
Identities:
584
Gaps:
3723

Alignment

Query    1  ATGTTTCCCCATCACTCGAGGA--------GTCTGGGCAGA------------GACTGGACTACACCGTGGGAG  54
                             ||.||        |||||||| ||            |||..|.||.||      |||
Sbjct    1  -----------------GAAGAGGAAGAGGGTCTGGGC-GATGGTGCATCCGGGACGAGCCTCCA------GAG  50

Query   55  ---AATCTGCAAAGGT-----------GTTGCTGG--------------AAC-AGACATATTTCTAGTTGTATG  99
               ||.|.|.|.||||           |..|||||              ||| ||              ||.||
Sbjct   51  ACCAAGCGGGATAGGTAAACCCGCCGCGCAGCTGGCGGGACGCTGGGCCAACGAG--------------GTCTG  110

Query  100  AGG---TGGCCTGGA---CATTACTCTCGAGCTCCTTAC-----CCATACTT----CAGTAGTAGGCATTTT--  156
            .||   ||||..|||   |||       |.||      |     |||..|||    ||||    |||  |||  
Sbjct  111  GGGTCTTGGCGCGGAGTTCAT-------GGGC------CGCCGGCCAGGCTTGTGCCAGT----GGC--TTTGG  165

Query  157  -TCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAG-TTCCAGTACTGTAACTGGAGACCTGAC  228
             ||.|     |||       ||||.||       .|...|||.||| .|||||..|         ||..|||  
Sbjct  166  ATCCC-----TGG-------CCTGCTT-------CCCCCAACCCAGCCTCCAGACC---------AGCGCTG--  209

Query  229  AACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGT--CATGAACGCTGAG-------GGAGATG-AGC  292
             .||||..|||.|||            |||...||...|||  |..|||  |.|||       ||.||.| .||
Sbjct  210  -GCCTGCTCCACACA------------CTCCGCAGCACCGTCCCGGGAA--CCGAGCGTCGGCGGGGAGGCCGC  268

Query  293  CT-TCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGA  365
            || ||..||                   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  CTCTCCGCA-------------------GTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGA  323

Query  366  AAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAG  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  AAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAG  397

Query  440  TGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCA  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  TGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCA  471

Query  514  GTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTT  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  GTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTT  545

Query  588  GCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT-------------  648
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct  546  GCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAAT  619

Query  649  -------------------------------------------------ACAATGCAACTTTT-----TT----  664
                                                             |||.|.|||.||||     ||    
Sbjct  620  ATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCA  693

Query  665  ---------------TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTG  700
                           ||.||         |.|||||.|.||     ||||||     ||    ||.|.|||||.
Sbjct  694  GTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTT  767

Query  701  TC-GCCCAA---------------CTGGAGTGCA------GTGGCACAAT-------------------CATGG  733
            .| ||||||               |||...||||      ||.||| |||                   ||.||
Sbjct  768  ACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGG  840

Query  734  C-------TCACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------A  775
            |       | |.|| |||   |.|||        .||||| |||       ||.|||..|.|.|.|       |
Sbjct  841  CGAGGTGAT-ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGA  911

Query  776  TTTCGGCTTCC---------------------------------------------------------------  786
            |..|.|||||.                                                               
Sbjct  912  TGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAA  985

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct  986  AGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAA  1059

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1060  CAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCA  1133

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1134  CATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATAT  1207

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1208  TTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAAC  1281

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1282  TTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCT  1355

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1356  TCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTT  1429

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1430  CCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGA  1503

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1504  TTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATA  1577

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1578  ATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCT  1651

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1652  AAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATT  1725

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1726  TCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTC  1799

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1800  CAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATT  1873

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1874  CACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAAT  1947

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1948  GCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATAT  2021

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2022  AAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGAC  2095

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2096  TGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTT  2169

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2170  TCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAA  2243

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2244  GCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTAT  2317

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2318  TTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACC  2391

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2392  TCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAA  2465

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2466  GATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGT  2539

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2540  CTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTA  2613

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2614  GTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTT  2687

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2688  TCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGC  2761

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2762  AGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTA  2835

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2836  GACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAG  2909

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2910  TGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAA  2983

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2984  GCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTG  3057

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3058  TCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTT  3131

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3132  TTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTC  3205

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3206  CTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCT  3279

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3280  AATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGG  3353

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3354  TGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGAT  3427

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3428  TTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCC  3501

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3502  CTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAA  3575

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3576  AATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGT  3649

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3650  CATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTG  3723

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3724  ACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATC  3797

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3798  AAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACT  3871

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3872  AAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACC  3945

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3946  TGCCAAAAACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTT  4019

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4020  TAAATGGAAAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCAT  4093

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4094  GTTTGAAATCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGA  4167

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4168  GATCCAGAGAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAA  4241

Query  787  ------------------  786
                              
Sbjct 4242  TAAACTATTATACTCGTA  4259

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