Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12944
- Subject:
- XR_001737528.1
- Aligned Length:
- 4384
- Identities:
- 584
- Gaps:
- 3723
Alignment
Query 1 ATGTTTCCCCATCACTCGAGGA--------GTCTGGGCAGA------------GACTGGACTACACCGTGGGAG 54
||.|| |||||||| || |||..|.||.|| |||
Sbjct 1 -----------------GAAGAGGAAGAGGGTCTGGGC-GATGGTGCATCCGGGACGAGCCTCCA------GAG 50
Query 55 ---AATCTGCAAAGGT-----------GTTGCTGG--------------AAC-AGACATATTTCTAGTTGTATG 99
||.|.|.|.|||| |..||||| ||| || ||.||
Sbjct 51 ACCAAGCGGGATAGGTAAACCCGCCGCGCAGCTGGCGGGACGCTGGGCCAACGAG--------------GTCTG 110
Query 100 AGG---TGGCCTGGA---CATTACTCTCGAGCTCCTTAC-----CCATACTT----CAGTAGTAGGCATTTT-- 156
.|| ||||..||| ||| |.|| | |||..||| |||| ||| |||
Sbjct 111 GGGTCTTGGCGCGGAGTTCAT-------GGGC------CGCCGGCCAGGCTTGTGCCAGT----GGC--TTTGG 165
Query 157 -TCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAG-TTCCAGTACTGTAACTGGAGACCTGAC 228
||.| ||| ||||.|| .|...|||.||| .|||||..| ||..|||
Sbjct 166 ATCCC-----TGG-------CCTGCTT-------CCCCCAACCCAGCCTCCAGACC---------AGCGCTG-- 209
Query 229 AACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGT--CATGAACGCTGAG-------GGAGATG-AGC 292
.||||..|||.||| |||...||...||| |..||| |.||| ||.||.| .||
Sbjct 210 -GCCTGCTCCACACA------------CTCCGCAGCACCGTCCCGGGAA--CCGAGCGTCGGCGGGGAGGCCGC 268
Query 293 CT-TCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGA 365
|| ||..|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CTCTCCGCA-------------------GTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGA 323
Query 366 AAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAG 397
Query 440 TGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCA 471
Query 514 GTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTT 545
Query 588 GCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT------------- 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAAT 619
Query 649 -------------------------------------------------ACAATGCAACTTTT-----TT---- 664
|||.|.|||.|||| ||
Sbjct 620 ATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCA 693
Query 665 ---------------TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTG 700
||.|| |.|||||.|.|| |||||| || ||.|.|||||.
Sbjct 694 GTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTT 767
Query 701 TC-GCCCAA---------------CTGGAGTGCA------GTGGCACAAT-------------------CATGG 733
.| |||||| |||...|||| ||.||| ||| ||.||
Sbjct 768 ACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGG 840
Query 734 C-------TCACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------A 775
| | |.|| ||| |.||| .||||| ||| ||.|||..|.|.|.| |
Sbjct 841 CGAGGTGAT-ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGA 911
Query 776 TTTCGGCTTCC--------------------------------------------------------------- 786
|..|.|||||.
Sbjct 912 TGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAA 985
Query 787 -------------------------------------------------------------------------- 786
Sbjct 986 AGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAA 1059
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1060 CAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCA 1133
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1134 CATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATAT 1207
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1208 TTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAAC 1281
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1282 TTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCT 1355
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1356 TCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTT 1429
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1430 CCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGA 1503
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1504 TTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATA 1577
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1578 ATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCT 1651
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1652 AAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATT 1725
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1726 TCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTC 1799
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1800 CAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATT 1873
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1874 CACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAAT 1947
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1948 GCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATAT 2021
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2022 AAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGAC 2095
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2096 TGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTT 2169
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2170 TCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAA 2243
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2244 GCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTAT 2317
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2318 TTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACC 2391
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2392 TCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAA 2465
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2466 GATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGT 2539
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2540 CTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTA 2613
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2614 GTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTT 2687
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2688 TCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGC 2761
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2762 AGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTA 2835
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2836 GACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAG 2909
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2910 TGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAA 2983
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2984 GCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTG 3057
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3058 TCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTT 3131
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3132 TTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTC 3205
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3206 CTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCT 3279
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3280 AATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGG 3353
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3354 TGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGAT 3427
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3428 TTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCC 3501
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3502 CTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAA 3575
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3576 AATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGT 3649
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3650 CATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTG 3723
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3724 ACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATC 3797
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3798 AAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACT 3871
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3872 AAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACC 3945
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3946 TGCCAAAAACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTT 4019
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4020 TAAATGGAAAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCAT 4093
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4094 GTTTGAAATCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGA 4167
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4168 GATCCAGAGAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAA 4241
Query 787 ------------------ 786
Sbjct 4242 TAAACTATTATACTCGTA 4259
