Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12944
- Subject:
- XR_001737529.2
- Aligned Length:
- 4596
- Identities:
- 753
- Gaps:
- 3814
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACCCGCCGCGCAGCTGGCGGGACGCTGGGCCAACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCAGGCTTGTGCCAGTGGCTTTGGATCCCTGGCCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGC 222
Query 1 ---------------------------------------------------------------------ATGTT 5
|||||
Sbjct 223 TCCACACACTCCGCAGCACCGTCCCGGGAACCGAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTT 296
Query 6 TCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACA 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACA 370
Query 80 GACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCAT 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCAT 444
Query 154 TTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGA 518
Query 228 CAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAA 592
Query 302 AACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAG 666
Query 376 ATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTA 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTA 740
Query 450 TAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACT 814
Query 524 GGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTT 888
Query 598 CAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT----------------------- 648
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCG 962
Query 649 ---------------------------------------ACAATGCAACTTTT-----TT-------------- 664
|||.|.|||.|||| ||
Sbjct 963 GACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAG 1036
Query 665 -----TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA- 708
||.|| |.|||||.|.|| |||||| || ||.|.|||||..| ||||||
Sbjct 1037 TGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAA 1110
Query 709 --------------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TC 736
|||...|||| ||.||| ||| ||.||| |
Sbjct 1111 ATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT- 1182
Query 737 ACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTC 785
|.|| ||| |.||| .||||| ||| ||.|||..|.|.|.| ||..|.|||||
Sbjct 1183 ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTC 1254
Query 786 C------------------------------------------------------------------------- 786
.
Sbjct 1255 TGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAA 1328
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1329 ATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCT 1402
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1403 AGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTC 1476
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1477 CTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCT 1550
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1551 GCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAG 1624
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1625 ACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATC 1698
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1699 TGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTA 1772
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1773 TTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCG 1846
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1847 GTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATA 1920
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1921 TTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGT 1994
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1995 AAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTT 2068
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2069 GGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTT 2142
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2143 GATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATC 2216
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2217 CAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCA 2290
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2291 TCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCAT 2364
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2365 AACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATA 2438
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2439 CCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGT 2512
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2513 TGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCC 2586
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2587 TGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGA 2660
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2661 GACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCA 2734
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2735 AAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGT 2808
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2809 TTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACA 2882
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2883 AAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGAT 2956
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2957 ATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGT 3030
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3031 TTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATA 3104
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3105 AATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGA 3178
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3179 ACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTAT 3252
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3253 TAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTA 3326
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3327 TAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAA 3400
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3401 ATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTG 3474
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3475 TCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAA 3548
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3549 GCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTA 3622
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3623 TTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCC 3696
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3697 GCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACA 3770
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3771 GTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCA 3844
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3845 GATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATT 3918
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3919 CATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAAC 3992
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3993 AAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCC 4066
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4067 CATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTA 4140
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4141 TTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATT 4214
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4215 ATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAAC 4288
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4289 AATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAA 4362
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4363 GGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATC 4436
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4437 TTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGA 4510
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4511 GTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTA 4584
Query 787 -------- 786
Sbjct 4585 TACTCGTA 4592
