Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12944
- Subject:
- XR_001737530.1
- Aligned Length:
- 4524
- Identities:
- 753
- Gaps:
- 3742
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG 148
Query 1 -----------------------------------------------------------------------ATG 3
|||
Sbjct 149 AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTATACCCCATG 222
Query 4 TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA 296
Query 78 CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC 370
Query 152 ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT 444
Query 226 GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC 518
Query 300 AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA 592
Query 374 AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC 666
Query 448 TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA 740
Query 522 CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG 814
Query 596 TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT--------------------- 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATG 888
Query 649 -----------------------------------------ACAATGCAACTTTT-----TT------------ 664
|||.|.|||.|||| ||
Sbjct 889 CGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCC 962
Query 665 -------TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCA 707
||.|| |.|||||.|.|| |||||| || ||.|.|||||..| |||||
Sbjct 963 AGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCA 1036
Query 708 A---------------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC------- 734
| |||...|||| ||.||| ||| ||.|||
Sbjct 1037 AAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGA 1109
Query 735 TCACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCT 783
| |.|| ||| |.||| .||||| ||| ||.|||..|.|.|.| ||..|.|||
Sbjct 1110 T-ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCT 1180
Query 784 TCC----------------------------------------------------------------------- 786
||.
Sbjct 1181 TCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGA 1254
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1255 AAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTC 1328
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1329 CTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTT 1402
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1403 TCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACT 1476
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1477 CTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCT 1550
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1551 AGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCA 1624
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1625 TCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTG 1698
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1699 TATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAG 1772
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1773 CGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAA 1846
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1847 TATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTA 1920
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1921 GTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATT 1994
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1995 TTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGC 2068
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2069 TTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTA 2142
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2143 TCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATC 2216
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2217 CATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGC 2290
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2291 ATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATA 2364
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2365 TACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTT 2438
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2439 GTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCT 2512
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2513 CCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTA 2586
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2587 GAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCT 2660
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2661 CAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTG 2734
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2735 GTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAA 2808
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2809 CAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAG 2882
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2883 ATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAAT 2956
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2957 GTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAA 3030
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3031 TAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAG 3104
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3105 GAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTT 3178
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3179 ATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGC 3252
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3253 TATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAA 3326
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3327 AAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGG 3400
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3401 TGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTC 3474
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3475 AAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTG 3548
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3549 TATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCAC 3622
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3623 CCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTA 3696
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3697 CAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAG 3770
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3771 CAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAA 3844
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3845 TTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTA 3918
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3919 ACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGG 3992
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3993 CCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAG 4066
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4067 TATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAA 4140
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4141 TTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAA 4214
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4215 ACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGA 4288
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4289 AAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAA 4362
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4363 TCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGA 4436
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4437 GAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTAT 4510
Query 787 ---------- 786
Sbjct 4511 TATACTCGTA 4520
