Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12944
Subject:
XR_001737530.1
Aligned Length:
4524
Identities:
753
Gaps:
3742

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG  148

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |||
Sbjct  149  AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTATACCCCATG  222

Query    4  TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA  296

Query   78  CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC  370

Query  152  ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT  444

Query  226  GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC  518

Query  300  AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA  592

Query  374  AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC  666

Query  448  TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA  521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA  740

Query  522  CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG  595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG  814

Query  596  TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT---------------------  648
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct  815  TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATG  888

Query  649  -----------------------------------------ACAATGCAACTTTT-----TT------------  664
                                                     |||.|.|||.||||     ||            
Sbjct  889  CGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCC  962

Query  665  -------TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCA  707
                   ||.||         |.|||||.|.||     ||||||     ||    ||.|.|||||..| |||||
Sbjct  963  AGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCA  1036

Query  708  A---------------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------  734
            |               |||...||||      ||.||| |||                   ||.|||       
Sbjct 1037  AAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGA  1109

Query  735  TCACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCT  783
            | |.|| |||   |.|||        .||||| |||       ||.|||..|.|.|.|       ||..|.|||
Sbjct 1110  T-ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCT  1180

Query  784  TCC-----------------------------------------------------------------------  786
            ||.                                                                       
Sbjct 1181  TCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGA  1254

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1255  AAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTC  1328

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1329  CTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTT  1402

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1403  TCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACT  1476

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1477  CTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCT  1550

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1551  AGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCA  1624

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1625  TCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTG  1698

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1699  TATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAG  1772

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1773  CGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAA  1846

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1847  TATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTA  1920

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1921  GTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATT  1994

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1995  TTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGC  2068

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2069  TTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTA  2142

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2143  TCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATC  2216

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2217  CATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGC  2290

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2291  ATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATA  2364

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2365  TACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTT  2438

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2439  GTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCT  2512

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2513  CCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTA  2586

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2587  GAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCT  2660

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2661  CAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTG  2734

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2735  GTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAA  2808

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2809  CAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAG  2882

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2883  ATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAAT  2956

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2957  GTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAA  3030

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3031  TAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAG  3104

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3105  GAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTT  3178

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3179  ATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGC  3252

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3253  TATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAA  3326

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3327  AAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGG  3400

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3401  TGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTC  3474

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3475  AAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTG  3548

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3549  TATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCAC  3622

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3623  CCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTA  3696

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3697  CAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAG  3770

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3771  CAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAA  3844

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3845  TTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTA  3918

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3919  ACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGG  3992

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3993  CCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAG  4066

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4067  TATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAA  4140

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4141  TTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAA  4214

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4215  ACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGA  4288

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4289  AAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAA  4362

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4363  TCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGA  4436

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4437  GAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTAT  4510

Query  787  ----------  786
                      
Sbjct 4511  TATACTCGTA  4520

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