Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12944
- Subject:
- XR_001737531.1
- Aligned Length:
- 4816
- Identities:
- 753
- Gaps:
- 4034
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGGAAGG 222
Query 1 --------------------------------------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGAC 36
||||||||||||||||||||||||||||||||||||
Sbjct 223 GCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGAC 296
Query 37 TGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGG 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGG 370
Query 111 ACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGT 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGT 444
Query 185 TTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTC 518
Query 259 TCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACC---------------- 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAA 592
Query 317 -------------------------------------------------------------------------- 316
Sbjct 593 GGAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCA 666
Query 317 -------------------------------------------------------------------------- 316
Sbjct 667 TTGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGC 740
Query 317 -------------------------------------------------------------------------- 316
Sbjct 741 ACCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTT 814
Query 317 -------------AAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGAT 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGAT 888
Query 378 CCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATA 962
Query 452 ATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGG 1036
Query 526 AGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCA 1110
Query 600 AGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT------------------------- 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGA 1184
Query 649 -------------------------------------ACAATGCAACTTTT-----TT---------------- 664
|||.|.|||.|||| ||
Sbjct 1185 CAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTG 1258
Query 665 ---TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA--- 708
||.|| |.|||||.|.|| |||||| || ||.|.|||||..| ||||||
Sbjct 1259 GAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAAT 1332
Query 709 ------------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TCAC 738
|||...|||| ||.||| ||| ||.||| | |.
Sbjct 1333 TCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-AT 1404
Query 739 TACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC- 786
|| ||| |.||| .||||| ||| ||.|||..|.|.|.| ||..|.|||||.
Sbjct 1405 TA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTG 1476
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1477 CCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAAT 1550
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1551 TGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAG 1624
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1625 TGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCT 1698
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1699 GACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGC 1772
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1773 AGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGAC 1846
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1847 TGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTG 1920
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1921 CCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATT 1994
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1995 GTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGT 2068
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2069 TATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATT 2142
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2143 TTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAA 2216
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2217 AATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGG 2290
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2291 CAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGA 2364
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2365 TTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCA 2438
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2439 ACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATC 2512
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2513 TTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAA 2586
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2587 CGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACC 2660
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2661 TTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTG 2734
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2735 CCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTG 2808
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2809 CCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGA 2882
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2883 CAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAA 2956
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2957 GTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTT 3030
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3031 AGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAA 3104
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3105 GTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATAT 3178
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3179 TAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTT 3252
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3253 TCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAA 3326
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3327 TCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAAC 3400
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3401 AAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTA 3474
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3475 ATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATA 3548
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3549 ATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAAT 3622
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3623 TGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTC 3696
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3697 TCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC 3770
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3771 AATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATT 3844
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3845 TTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGC 3918
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3919 CTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGT 3992
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3993 ATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGA 4066
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4067 TATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCA 4140
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4141 TTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAA 4214
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4215 ACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCA 4288
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4289 TTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATT 4362
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4363 ATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTAT 4436
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4437 CCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAA 4510
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4511 TTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGG 4584
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4585 TAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTT 4658
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4659 GTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGT 4732
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4733 TCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATA 4806
Query 787 ------ 786
Sbjct 4807 CTCGTA 4812
