Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12945
- Subject:
- XR_001737528.1
- Aligned Length:
- 4386
- Identities:
- 731
- Gaps:
- 3655
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTAAACCCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCGCAGCTGGCGGGACGCTGGGCCAACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGGCCAGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTGCCAGTGGCTTTGGATCCCTGGCCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGCTCCACAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCGCAGCACCGTCCCGGGAACCGAGCGTCGGCGGGGAGGCCGCCTCTCCGCAGTGTGATAAAGCGGAATTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAG 370
Query 1 -----------------------------ATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCT 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCT 444
Query 46 CACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAA 518
Query 120 ACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTT 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTT 592
Query 194 TGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTC 666
Query 268 AAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAG 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAG 740
Query 342 AGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAA 814
Query 416 ATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATT 888
Query 490 TCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGG 962
Query 564 TTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGGTATCTGGCC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAA------------ 1024
Query 638 AGGAACAGTCTTCACGGGGACAAAGAATTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTATCTCACAGAAC 711
Sbjct 1025 -------------------------------------------------------------------------- 1024
Query 712 TGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGAAAAGACAGACAGTGATCTGACACAAACACAGCTGAAGCA 785
|||||||||||||||||||||||||||||||||
Sbjct 1025 -----------------------------------------AGACAGTGATCTGACACAAACACAGCTGAAGCA 1057
Query 786 AACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTAT- 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATT 1131
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1132 CACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTAT 1205
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1206 ATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAA 1279
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1280 ACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACT 1353
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1354 CTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCT 1427
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1428 TTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGA 1501
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1502 GATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAA 1575
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1576 TAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATT 1649
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1650 CTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCA 1723
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1724 TTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTT 1797
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1798 TCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCA 1871
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1872 TTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGA 1945
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1946 ATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAAT 2019
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2020 ATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAG 2093
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2094 ACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAG 2167
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2168 TTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTC 2241
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2242 AAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGT 2315
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2316 ATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCA 2389
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2390 CCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTT 2463
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2464 AAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTT 2537
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2538 GTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTC 2611
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2612 TAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTG 2685
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2686 TTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGA 2759
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2760 GCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTG 2833
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2834 TAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTAC 2907
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2908 AGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTA 2981
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2982 AAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATT 3055
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3056 TGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATT 3129
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3130 TTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCC 3203
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3204 TCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAG 3277
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3278 CTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGG 3351
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3352 GGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGG 3425
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3426 ATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTG 3499
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3500 CCCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGA 3573
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3574 AAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAG 3647
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3648 GTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTG 3721
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3722 TGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTA 3795
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3796 TCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCA 3869
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3870 CTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTA 3943
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3944 CCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGT 4017
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4018 TTTAAATGGAAAGGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTC 4091
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4092 ATGTTTGAAATCTTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTT 4165
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4166 GAGATCCAGAGAGTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGT 4239
Query 859 -------------------- 858
Sbjct 4240 AATAAACTATTATACTCGTA 4259
