Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12945
- Subject:
- XR_001737532.1
- Aligned Length:
- 4938
- Identities:
- 731
- Gaps:
- 4207
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTAAACCCGCCGCGCAGCTGGCGGGACGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGGCCAGGCTTGTGCCAGTGGCTTTGGATCCCTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGCTCCACACACTCCGCAGCACCGTCCCGGGAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATC 888
Query 1 ---------------------------------------------------------------ATGTCCTATAA 11
|||||||||||
Sbjct 889 CTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAA 962
Query 12 TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA 1036
Query 86 GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA 1110
Query 160 GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGAC 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGAC 1184
Query 234 AGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGG 1258
Query 308 AATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATT 1332
Query 382 CCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAA 1406
Query 456 GCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTA 1480
Query 530 TTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAAT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAAT 1554
Query 604 TATGAAGGACTTCCCATAGGAAAGGTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGAATTTTATCTATTCC 677
||||||||||||||||||||||
Sbjct 1555 TATGAAGGACTTCCCATAGGAA---------------------------------------------------- 1576
Query 678 AATTTGGCCCCCAAACCTAGGTATCTCACAGAACTGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGAAAAGA 751
Sbjct 1577 -------------------------------------------------------------------------- 1576
Query 752 CAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAAT 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 -AGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAAT 1649
Query 826 TTACAGCACCATTTCAGTTTGTCATCTGTTTAT----------------------------------------- 858
|||||||||||||||||||||||||||||||||
Sbjct 1650 TTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCAC 1723
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1724 CTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACC 1797
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1798 CAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTA 1871
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1872 TGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGA 1945
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1946 GCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTA 2019
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2020 AGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATA 2093
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2094 TCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCT 2167
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2168 CTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAAT 2241
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2242 GCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTAT 2315
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2316 CTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAG 2389
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2390 TTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTG 2463
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2464 AAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATA 2537
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2538 TGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTG 2611
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2612 GAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTAT 2685
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2686 TTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAA 2759
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2760 TCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATT 2833
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2834 ACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCT 2907
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2908 GGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCAC 2981
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2982 TGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAAC 3055
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3056 CAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTT 3129
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3130 AAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAA 3203
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3204 ATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGA 3277
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3278 GATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAAT 3351
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3352 TTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAG 3425
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3426 TAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAA 3499
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3500 AACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATG 3573
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3574 AAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTA 3647
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3648 ATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGC 3721
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3722 AGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGT 3795
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3796 AGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATG 3869
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3870 TTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTA 3943
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3944 CAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCA 4017
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4018 CATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGAT 4091
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4092 AGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTG 4165
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4166 TGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGA 4239
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4240 AAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGA 4313
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4314 GTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGT 4387
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4388 CAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCA 4461
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4462 GAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAACCA 4535
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4536 AATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAACTGTGGAGTAATGAAATTTTGG 4609
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4610 TTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCTTTATTTGGAATTTAGTTACTGT 4683
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4684 CTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAAGGGATTGGGGAAAGAGAGGCGT 4757
Query 859 ------------------------------------------------------ 858
Sbjct 4758 CAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCGTA 4811
