Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12965
• Subject: XM_006501991.2
• Aligned Length: 2030
• Identities: 1491
• Gaps: 346

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAATGACGTTTCGCAAAAGGCAGAGATTCTGCTTTCCTCATGTAAACCTGTCCCTAAGTCCTATGTGCCAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTTGGCAAGGGAGATGTAAAGGACAAGTTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCAAAGGCGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAGATT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAGAAATGCTTGCTTCTGATGATGAGGAAGAAAGTTCTCCTAAAATAGAAAAGGCTTATGTCCCAAAGCTAAC  296

Query    1  ----------------------------ATGGAGAAACAAAGACAAGAGGAACAAAGGAAGAGAACGGAGGAGG  46
                                        |||||||||||.|||||.||.||||||||.||||||||.||.||.|
Sbjct  297  AGGGACAGTTAAAGGTAAATTCGATGAAATGGAGAAACACAGACAGGAAGAACAAAGAAAGAGAACAGAAGAAG  370

Query   47  AACGAAAACGCAGAATTGAGCAGGATATGTTAGAAAAGAGGAAAATACAGCGTGAATTAGCAAAAAGGGCTGAA  120
            ||.|||||||||||||||||||||||.|||||||||||||||||||||||||.||||||||||||||.||.||.
Sbjct  371  AAAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATACAGCGCGAATTAGCAAAAAGAGCGGAG  444

Query  121  CAGATTGAGGACATAAACAATACGGGAACTGAATCAGCATCAGAGGAAGGAGATGATTCACTACTTATAACTGT  194
            |||||||||||||||||||||||||||||.||.||.||||||||||||||||||||.||||||||||||||.||
Sbjct  445  CAGATTGAGGACATAAACAATACGGGAACCGAGTCCGCATCAGAGGAAGGAGATGACTCACTACTTATAACAGT  518

Query  195  GGTACCTGTCAAATCATATAAAACATCTGGAAAAATGAAAAAGAATTTTGAGGATCTAGAAAAAGAACGTGAAG  268
            ||||||||.|||||||||.||||||.||||||||   |.||||.||..||||||.||.||.|.||||   ||||
Sbjct  519  GGTACCTGCCAAATCATACAAAACACCTGGAAAA---ACAAAGGATCCTGAGGACCTGGACAGAGAA---GAAG  586

Query  269  AGAAA-GAAAGGATCAAGTACGAGGAAGATAAAAGAATAAGATATGAAGAACAACGACCATCTCTCAAGGAAGC  341
             |||| |..||.|.|||..|.||.||||||||   |||.||||||||||||.|..|.|.|..||||||.|||||
Sbjct  587  -GAAATGGGAGAACCAACCATGAAGAAGATAA---AATGAGATATGAAGAAGAGTGCCGAGTTCTCAAAGAAGC  656

Query  342  AAAGTGTCTTTCATTAGTTATGGATGATGAAATAGAAAGTGAAGCAAAAAAAGAATCACTTTCTCCCGGAAAAT  415
            |||.||||||||||||||.|||||||||||||.|      ||.||.|||||||||||||.||.|||.|||||||
Sbjct  657  AAAATGTCTTTCATTAGTCATGGATGATGAAACA------GAGGCCAAAAAAGAATCACATTTTCCTGGAAAAT  724

Query  416  TGAAACTAACTTTTGAAGAACTGGAGCGACAAAGACAAGAAAACCGAAAGAAGCAAGCTGAAGAGGAAGCAAGA  489
            |||||..||||||||||||||||||.|||||||||||||||||.||.|||||||||||.|||||||||||.|||
Sbjct  725  TGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAATCGCAAGAAGCAAGCGGAAGAGGAAGCGAGA  798

Query  490  AAACGTTTAGAAGAAGAGAAGCGTGCTTTTGAAGAAGCAAGGCGGCAAATGGTAAATGAAGATGAGGAAAACCA  563
            ..|||.|||||||||||||..|||.|.|||||.||.||.||..||||.|||||||||||.||.||.||||||||
Sbjct  799  CGACGCTTAGAAGAAGAGAGACGTTCCTTTGAGGAGGCGAGAAGGCACATGGTAAATGAGGAGGATGAAAACCA  872

Query  564  AGACACAGCAAAAATTTTTAAAGGGTACCGCCCTGGTAAACTCAAACTCAGTTTTGAAGAAATGGAAAGGCAAA  637
            |||.|.||.||.|.|||||||||.|||||||||.||.||||||||||||||||||||.|||||.||||||||||
Sbjct  873  AGATAGAGAAACAGTTTTTAAAGAGTACCGCCCAGGAAAACTCAAACTCAGTTTTGAGGAAATAGAAAGGCAAA  946

Query  638  GAAGAGAAGATGAAAAAAGGAAAGCAGAAGAAGAAGCCAGAAGGAGAATAGAGGAAGAAAAGAAGGCGTTTGCT  711
            |.||||||||.||||||.|.||||||||.||.||.|||.|||||||||||||||||||.|||..|||.||||||
Sbjct  947  GGAGAGAAGACGAAAAACGAAAAGCAGAGGAGGAGGCCCGAAGGAGAATAGAGGAAGAGAAGGCGGCATTTGCT  1020

Query  712  GAAGCAAGGAGAAATATGGTAGTAGATGATGACTCCCCAGAGATGTATAAGACAATCTCTCAAGAATTTCTTAC  785
            |||||||||||||..||||||.||||||||||.|||||||||||.|||||.|||.|.||||||||||.||||||
Sbjct 1021  GAAGCAAGGAGAAGCATGGTATTAGATGATGATTCCCCAGAGATTTATAAAACAGTGTCTCAAGAATCTCTTAC  1094

Query  786  ACCGGGAAAACTGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAAACGACGAACAGAGG  859
            .||.||||||||.|||||||||||||||.|||||||||.||||||||||||||||||||.||||||||||||||
Sbjct 1095  TCCTGGAAAACTAGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGG  1168

Query  860  AGGAACGGAAGCATAAGCTAGAAATGGAGAAACAAGAATTTGAACAACTGAGACAGGAAATGGGAGAGGAAGAG  933
            |.|||||.|.||||||.|||||||||||||||||.||||||||||||||||||||.|||||||||.|||||||.
Sbjct 1169  AAGAACGCAGGCATAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAGGAAGAA  1242

Query  934  GAAGAAAATGAAACCTTTGGATTGAGCAGAGAATATGAAGAACTGATCAAATTAAAAAGGAGTGGCTCTATTCA  1007
            |||||||||||||.||||||.|||||.|||||||||||||||.|.||.||||||||||||||||||||.|||||
Sbjct 1243  GAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGCTCAATTCA  1316

Query 1008  AGCTAAAAACCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAATACAGAAAAAAATAGAAG  1081
            |||||||||.|||||||||||||||||||||||||||||.|||||||||||||||.||||||||||.|||||||
Sbjct 1317  AGCTAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAATTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAG  1390

Query 1082  AAGAGCGAGCAAGAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCTGAAAATTTTCATGAGGAAGAT  1155
            ||||||||||||.||||.|||||||||||||||||||.||||||||||||||.|||||.||.||||||||.|||
Sbjct 1391  AAGAGCGAGCAAAAAGGCGAGCAATTGACCTTGAAATCAAAGAGCGAGAAGCAGAAAACTTCCATGAGGACGAT  1464

Query 1156  GATGTTGATGTTAGGCCTGCAAGAAAAAGCGAGGCTCCATTTACTCACAAAGTGAATATGAAAGCTAGATTTGA  1229
            |||||||||||.||||||||||..||.||.|||.||||.||||||||.||.|||||.||||||||.||.|||||
Sbjct 1465  GATGTTGATGTAAGGCCTGCAAAGAAGAGTGAGTCTCCTTTTACTCATAAGGTGAACATGAAAGCCAGGTTTGA  1538

Query 1230  ACAAATGGCTAAGGCAAGAGAAGAAGAAGAACAAAGAAGAATTGAAGAACAAAAGTTACTACGCATGCAGTTTG  1303
            |||||||||.||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1539  ACAAATGGCAAAGGCAAGAGAAGAGGAAGAACAAAGAAGAATTGAAGAACAAAAGTTACTACGAATGCAGTTTG  1612

Query 1304  AACAAAGGGAAATTGATGCAGCACTACAAAAGAAAAGAGAAGAGGAGGAGGAGGAAGAAGGTAGCATCATGAAT  1377
            ||||.|..|||||.|||||.|||.||||.||||||||||||||.||||||||.||||||||||||||..|.|||
Sbjct 1613  AACAGAAAGAAATCGATGCGGCATTACAGAAGAAAAGAGAAGATGAGGAGGAAGAAGAAGGTAGCATTGTTAAT  1686

Query 1378  GGCTCCACTGCTGAAGATGAAGAGCAAACCAGATCAGGAGCTCCATGGTTCAAGAAGCCTCTTAA-AAACACAT  1450
            |||||||||.|||||||||||||||||||||||||||||||||||||||||||.|||||| |||| |||.||.|
Sbjct 1687  GGCTCCACTACTGAAGATGAAGAGCAAACCAGATCAGGAGCTCCATGGTTCAAAAAGCCT-TTAAGAAATACCT  1759

Query 1451  CAGTTGTAGACAGTGAGCCAGTCAGATTTACGGTTAAAGTAACAGGAGAACCCAAACCAGAAATTACATGGTGG  1524
            |||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||||||||||||
Sbjct 1760  CAGTTGTAGACAGTGAGCCAGTCAGATTTACTGTTAAAGTAACAGGAGAACCCAAGCCGGAAATTACATGGTGG  1833

Query 1525  TTTGAAGGAGAAATACTGCAGGATGGAGAAGACTATCAATATATTGAAAGGGGAGAAACTTACTGCCTTTACTT  1598
            ||||||||||||||||||||||||||||||||||||||.||.||.|||||.||.||||||||||||||.||.||
Sbjct 1834  TTTGAAGGAGAAATACTGCAGGATGGAGAAGACTATCAGTACATCGAAAGAGGTGAAACTTACTGCCTGTATTT  1907

Query 1599  ACCAGAAACTTTCCCAGAAGATGGAGGAGAGTATATGTGTAAAGCAGTCAACAATAAAGGATCTGCAGCTAGTA  1672
            |||.|||||.|||||||||||||||||||||||.||||||||.|||||||||||||||||.||.|||||.||.|
Sbjct 1908  ACCGGAAACCTTCCCAGAAGATGGAGGAGAGTACATGTGTAAGGCAGTCAACAATAAAGGCTCAGCAGCGAGCA  1981

Query 1673  CCTGTATTCTTACCATTGAAA-GTAAGAAT--  1701
            ||||.|||||||||||||||| |.|.||.|  
Sbjct 1982  CCTGCATTCTTACCATTGAAATGGATGACTAC  2013