Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12975
• Subject: XR_002957208.1
• Aligned Length: 5266
• Identities: 1515
• Gaps: 3743

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA  296

Query    1  -----------------------------------------------------------------ATGCCATCA  9
                                                                             |||||||||
Sbjct  297  AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA  370

Query   10  ACATCCTGCAGAATGAAA--------------------------------------------------------  27
            ||||||||||||||||||                                                        
Sbjct  371  ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG  444

Query   28  ---------------------------------------------------CATCTGACAGATACGTCTCATGG  50
                                                               |||||||||||||||||||||||
Sbjct  445  CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG  518

Query   51  TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG  124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG  592

Query  125  GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCA  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCA  666

Query  199  GCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAA  272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAA  740

Query  273  ATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATC  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATC  814

Query  347  CTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGT  888

Query  421  CACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAG  494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAG  962

Query  495  TTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGC  568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGC  1036

Query  569  GTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAA  642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAA  1110

Query  643  GTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGAT  716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGAT  1184

Query  717  GTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGT  790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGT  1258

Query  791  GCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGA  864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGA  1332

Query  865  AAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAG  938
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAG  1406

Query  939  AGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCAT  1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCAT  1480

Query 1013  TGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTG  1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTG  1554

Query 1087  GGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGC  1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGC  1628

Query 1161  TGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAA  1234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAA  1702

Query 1235  CAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTT  1308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTT  1776

Query 1309  CCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCC  1382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCC  1850

Query 1383  TTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGG  1456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGG  1924

Query 1457  AGCTGCTGGAATTCACCATCAGAG-------------TCGAG-GTTTCACCAT-----------GGTG------  1499
            ||||||||||||||||||||||.|             |.||| ..||||  ||           ||.|      
Sbjct 1925  AGCTGCTGGAATTCACCATCAGGGATCTGCAAAGACTTGGAGAACTTCA--ATCTGAATTGGCAGGAGTAGCTG  1996

Query 1500  --------GCCA--------GGCTGGTCTCAA--ACTCCTGAGCTCAAG-------------------------  1530
                    ||||        .||||   ||||  |||.||.|  |||||                         
Sbjct 1997  ATTTCTCTGCCACCTATCTTCGCTG---TCAACTACTTCTCA--TCAAGGCCTTGCAGGAAAAGTTGTGGAATG  2065

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2066  TAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGATTATGGAAGAGACCTAC  2139

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2140  AAAATGGAATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAA  2213

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2214  AGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCC  2287

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2288  CCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGC  2361

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2362  ATCTCCCGCTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATCGAGCCAGCGGGCGAGTCAGACAACCCT  2435

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2436  TTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAA  2509

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2510  CACTGTTAAGGTCCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATTCACCCCAAGCCTGCAGACTTCCGGA  2583

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2584  ATCCTGGCCCAGGGCGGCACCGGCTCATCACTCAGGTTTATCTCTCCCACACCGCTTGGACAGGATGTGCCATG  2657

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2658  AAGCTGTAGCCAGGTGGAATTGTACCACAGCCCTGACATGAACACCTGATGGCAGCTGCTGGGTTGGAGCCTAG  2731

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2732  ACAAAAACATGAAGAACCATGGCTGCTGCCTGAGCCCATCGTGCTGTAATTATAGAAAACCTTCTAAGGGAAGA  2805

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2806  ATATGCTGATATTTTTCAGATAAGTACCCCTTTTATAAAAATCCTCCAAGTTAGCCCTCATTTTCCATGTAAGG  2879

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2880  AAACAGAGGCTTTGAGATAATGTCTGTCTCCTAAGGGACAAAGCCAGGACTTGATCCTGTCTTAAAAATGCAAA  2953

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2954  ATGTAGTACTTCTTCCATCAAAGGTAGACATGCACTAAGGGACAGGTTTTGGCTTGGTATCAGAATACATTTTT  3027

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3028  AAAAGCTGTGTAAGAATTGAACGGGCTGTACTAGGGGGTATAGAATTCTCCAGGCTAGATGAGTTTGGGCAGAG  3101

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3102  GTTGAACAAGCTCCTGACAAATTTGTTGCTAAGCAATTCAAGTATCGTATCGGGGTTGGGCTCAACTTTTTAAA  3175

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3176  TTGCTTTTACCCTGAATTTTCACGTTCTGGGGAACATGAGAATTTTAGTTTTTCTCTATCTGATTCTGTACTTT  3249

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3250  TTCACTGAAGTGAAAAAAAAAAAAAGACCTTTTTATAAAGGTTTCGAAGGGGGCATAAAGAGCACTCCAGTGTG  3323

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3324  GCACCTTCATTTACAAATGAATACGCAGGCCCAGAGAGACTGAGTTAGTGGTGAAGCTAAGCCTGGAACCCAGG  3397

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3398  CCTCTGGTTTCTTCCCCAGGTGACTTTCATCACAGGGGTCTGTTCTTAGTGAGTGGTCTAGCATGCACCCAGCA  3471

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3472  GTCAGAGCCAGAAACCTGTTTGGCACGTTGGATTCCTTCCTCATCCCTCATACAAAAGTAGCCATCAAGTCCTT  3545

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3546  TAGATTCCTCTTCCTTCATGTTTCTTAGTCCTCTTCTTATACTGTTTGTATACTGATGGAACCACCATCAGCCC  3619

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3620  TCCTTAAGTGATGAGCTGATCTGACCACACCATTCCCCTGCTCAGTCCCTTTCAGTGGATCACTGCTCATCCCA  3693

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3694  GGAAAAAGTCTGAACTCCTGTCTTGAAGGCTCTTCATGGCTCTGCTTCGTTTCCAGCCTCATACTCCCTGTCCC  3767

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3768  AAACTGTCTCTGTACTCCACTTGAACAGAATTACCTGTAGTCTTTTTCTGTCACCTCTAGGCCTTTGGACCTGC  3841

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3842  TGAGCCTGGGAATGTGCTCCTCAGACTGTCTCCTGTGGTTCTTTCCTTCCATTCTTCAGGACTGGGCCTTGTTC  3915

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3916  TAGGACATATCTGTGTCTCTTATGGGCTTGGAACATTTCCTCTATGTTCCCACAGCCTCCTATACTATATTCTT  3989

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3990  CACACATAGTATAGTATTTATTAATATGGCATTGCAGGTTCACAAATGCAAACCCCTTAAGAAAGGTAGGCAGG  4063

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4064  AAAAGTAAAGGAATAAAGTGGCCTAGAAGATAACAGCAATTGGAAGAATCAGAGAGCACATTCTCTGTTGGAGA  4137

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4138  AGGCGGTGCTATTCCATTCCACTCAGTTATTTTCATTTATAAGTGTGGACCTAGTGGTGTCAGTTCTTCCCATT  4211

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4212  CTTCCAAAACAGCCAGAAATCTTCATTTTCATGAAAGTTAAAAAACCTTGGTAACTACAGTAAATATTAAAATT  4285

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4286  ACTGAGACAAACAAAACATGTCTCCAGGCAGATTTGTGCCAATTTGCAACTTCTACATCCTCACTGTAATGTTT  4359

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4360  ACACGCCTTATTTCTTCCAACTGATCTGTACCTGGACTGTAAGAATGTCTGTGCTGTATGCCCAGCACAACTCC  4433

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4434  TGGCACATAACCGGGCAAGGAAAGAATGATTCTATGTCTCCAGAGCAAAGGTAGCAGTACCATGGCATGCTGCA  4507

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4508  AAAAAAGATTCAGGTTTCTGAAAGGACTTTATATTTGCTTTGAGATGATTGAACTCAGCAAACACAATCATGGA  4581

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4582  GAAGAAAGGTACACACCTAGCTGTGGCCAGCTTCATGTCTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGT  4655

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4656  CACCCAGGCTGGAGTGCAGTGGCACGATCTCACCTCACAGCAGGCTCTGCCGCCCTGGTTCCAGCGATTCTCCT  4729

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4730  GCCTCAGCCTCCCAAGTAGACTAGCTGGGATTACAGGCACGTGCCACCACGCCTGGCTAATTTTTGTATTTTTA  4803

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4804  GTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTGCTGACCTCAGGTGATCTGCCCACCTCGGC  4877

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4878  CTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCAACTTCTTGTCTTAACCACTCAGGCTAGA  4951

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 4952  AGAAATGACCTGTGGGCAGCTTGAGGGCTGTTCTACCTACAAACTAACTCAGAGGCTTTAATGATTTAAGACAG  5025

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 5026  AGGACTAAGTATAGTTATGTGGAGAAACAGCTTCCCTTCAAGCTCTACATATTTCCATCGTTAACCATGTGCAC  5099

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 5100  CAGGTTCCAAAGTAGGGGCTATGTATTAGCAGGTTTTCTTAAAAGTTTAATAATGTCACTGACAGATACTTCTG  5173

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 5174  TCTCTAAGAAGTTTACACTAAGTTCTCTTTAATTGGAGACAACTCACTTAGGAAGAATGATTACACCCACACTG  5247

Query 1531  ------------  1530
                        
Sbjct 5248  AATTCAACACCC  5259