Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12996
Subject:
XR_001747259.1
Aligned Length:
2299
Identities:
1823
Gaps:
473

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGACTTCATTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCTTTTGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAGGTATTCCCATCTGTCGACAACACT  222

Query    1  --------------ATGGAACTTGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGGACCTTG  60
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  223  TAATTTGGAATAACATGGAACTTGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGTACCTTG  296

Query   61  AAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGACGAT  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  297  AAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGAT  370

Query  135  GGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGG  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGG  444

Query  209  TATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCT  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCT  518

Query  283  GACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATG-----------  345
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct  519  GACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTTATTGTTT  592

Query  346  -------AGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGC  412
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTTTGCAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGC  666

Query  413  AACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTC  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTC  740

Query  487  AGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCAC  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCAC  814

Query  561  TGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATG  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATG  888

Query  635  CATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCT  962

Query  709  TCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGT  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGT  1036

Query  783  CAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTG  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTG  1110

Query  857  GATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCT  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCT  1184

Query  931  TCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGC  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGC  1258

Query 1005  TGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAG  1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAG  1332

Query 1079  GGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTT  1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTT  1406

Query 1153  CTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCT  1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCT  1480

Query 1227  ACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTC  1300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTC  1554

Query 1301  AGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGAT  1374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGAT  1628

Query 1375  TCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTC  1448
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTC  1702

Query 1449  CAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGAT  1522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGAT  1776

Query 1523  TACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAG  1596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAG  1850

Query 1597  GAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAAT  1670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAAT  1924

Query 1671  GAATGGAAATAATGCAGCAGCAGGGAAAAGCGTA----------------------------------------  1704
            ||||||||||||||||||||||||||||||||||                                        
Sbjct 1925  GAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGATAAGTCAAATTCTACTGGGTTGACAAGGTAGAGTTTA  1998

Query 1705  ----------------------------------------------GGAGAATGTACTACTCATCACCTCCCAC  1732
                                                          ||||||||||||||||||||||||||||
Sbjct 1999  CTTTAGAAGAGATTGCAGATGTGGAAGGACTTGGTACATCCTTCGGGGAGAATGTACTACTCATCACCTCCCAC  2072

Query 1733  CTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTG  1806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTG  2146

Query 1807  GCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTAC  1880
            ||||||||||||||||||||                                                      
Sbjct 2147  GCTAGTAGCTACGAATGCAG------------------------------------------------------  2166

Query 1881  CTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAA  1954
                                                                                      
Sbjct 2167  --------------------------------------------------------------------------  2166

Query 1955  AAATC  1959
                 
Sbjct 2167  -----  2166

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