Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12996
Subject:
XR_001747260.1
Aligned Length:
4085
Identities:
1901
Gaps:
2181

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGACTTCATTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCTTTTGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAGGTATTCCCATCTGTCGACAACACT  222

Query    1  --------------ATGGAACTTGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGGACCTTG  60
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  223  TAATTTGGAATAACATGGAACTTGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGTACCTTG  296

Query   61  AAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGACGAT  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  297  AAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGAT  370

Query  135  GGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGG  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGG  444

Query  209  TATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCT  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCT  518

Query  283  GACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATG-----------  345
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct  519  GACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTTATTGTTT  592

Query  346  -------AGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGC  412
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTTTGCAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGC  666

Query  413  AACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTC  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTC  740

Query  487  AGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCAC  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCAC  814

Query  561  TGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATG  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATG  888

Query  635  CATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCT  962

Query  709  TCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGT  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGT  1036

Query  783  CAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTG  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTG  1110

Query  857  GATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCT  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCT  1184

Query  931  TCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGC  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGC  1258

Query 1005  TGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAG  1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAG  1332

Query 1079  GGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTT  1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTT  1406

Query 1153  CTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCT  1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCT  1480

Query 1227  ACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTC  1300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTC  1554

Query 1301  AGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGAT  1374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGAT  1628

Query 1375  TCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTC  1448
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTC  1702

Query 1449  CAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGAT  1522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGAT  1776

Query 1523  TACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAG  1596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAG  1850

Query 1597  GAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAAT  1670
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1851  GAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTT---------------------  1903

Query 1671  GAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCC  1744
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct 1904  ----------------------------------GGAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCC  1943

Query 1745  CTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTAC  1818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944  CTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTAC  2017

Query 1819  GAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAA  1892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018  GAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAA  2091

Query 1893  GAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAATC-------  1959
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 2092  GAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAATCTAACTCT  2165

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2166  TCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATAATGACAGAAGAAATGTTGTTTAGACTATTATTTT  2239

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2240  TGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATACAATGCATACTGTTGGAGAACAAGAATGCTACTGT  2313

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2314  ATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAAAGTAGTTTTAACAACTTTACACTGGAATGATTTA  2387

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2388  GCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATATGATATTGCAGTTTTACTAGGCAAATCTTCAAAAG  2461

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2462  ATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGCTTCCACATTGTACAGAATGAGCAGTCATGTAATG  2535

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2536  AATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTTTCTTTCTTTTATTCTTCTCCTTCTTTTTTTTTCA  2609

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2610  GAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGTGAAAGTTTACTGGCTTTATTAGCAAGTTCCTTTT  2683

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2684  TACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAGTGTGGTTTTTAACAGATAATACATTTCTTCCACA  2757

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2758  TTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACACATCGTGTTCATGATAGTGTATATTTTACTACTT  2831

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2832  TTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCCATTAAATATAGAAGCCAACTTTTTACCTTTTGAA  2905

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2906  ATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTTTCTTATTTGTTGAGTGCTATTACCAGGAGAAATT  2979

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2980  CAAATAAATATTCAATTTCATTATGAATTTCATTATTTATTTATAATAGTTTTTCTTTTATAAATAATTTTTCT  3053

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3054  TTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACGTGGATAAAATAACTATCAGTATAAAAATATTCTT  3127

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3128  TTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAAACCACTAAGGCACTTAGTGGCCACTTGCTGTATA  3201

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3202  GAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAACTAGCACCTAACCCAGGTAGACTCTGCAGCCCTGG  3275

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3276  GGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAGTACCAGAAGGCTAACTTAGGAGCTGTGAGGGGCC  3349

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3350  CCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACTGCCCCTGCTCCTGTAAGAAATGAAATGTTGATGG  3423

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3424  AGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAAGAGGGAATGGCTAAAAGTTAGCAGAGGAGCTATG  3497

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3498  CAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGATATAAGTAGATGAAAAATACTTTCATCTGTGTTAT  3571

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3572  GAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTGTTTTAGACACTTAAAATATAAGAACTGCCTTACA  3645

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3646  GAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTCTGCAAACAAATATGAATGCCTAGGGCCTACTTGA  3719

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3720  TGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGAAGTAAGTCTCATTCTAAGTTTTACTAAAGATTGT  3793

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3794  GGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGACAGCTGAACTATTTTAATTCAACAAGTTATATCAT  3867

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3868  TATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACACAGACACATTCCAAATTTTAGAGACATTGTATCTG  3941

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3942  TCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTAGGTACTGGTTAAACATTAGTTGAATAAATTGATG  4015

Query 1960  ---------------  1959
                           
Sbjct 4016  CATTGGACAACTTAA  4030

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