Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12996
- Subject:
- XR_001747260.1
- Aligned Length:
- 4085
- Identities:
- 1901
- Gaps:
- 2181
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGACTTCATTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTTTTGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAGGTATTCCCATCTGTCGACAACACT 222
Query 1 --------------ATGGAACTTGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGGACCTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 223 TAATTTGGAATAACATGGAACTTGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGTACCTTG 296
Query 61 AAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGACGAT 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 297 AAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGAT 370
Query 135 GGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGG 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGG 444
Query 209 TATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCT 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCT 518
Query 283 GACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATG----------- 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTTATTGTTT 592
Query 346 -------AGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGC 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTTTGCAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGC 666
Query 413 AACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTC 740
Query 487 AGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCAC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCAC 814
Query 561 TGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATG 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATG 888
Query 635 CATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCT 962
Query 709 TCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGT 1036
Query 783 CAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTG 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTG 1110
Query 857 GATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCT 1184
Query 931 TCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGC 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGC 1258
Query 1005 TGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAG 1332
Query 1079 GGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTT 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTT 1406
Query 1153 CTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCT 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCT 1480
Query 1227 ACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTC 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTC 1554
Query 1301 AGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGAT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGAT 1628
Query 1375 TCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTC 1448
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTC 1702
Query 1449 CAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGAT 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGAT 1776
Query 1523 TACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAG 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAG 1850
Query 1597 GAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAAT 1670
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTT--------------------- 1903
Query 1671 GAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCC 1744
||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 ----------------------------------GGAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCC 1943
Query 1745 CTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTAC 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 CTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTAC 2017
Query 1819 GAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAA 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 GAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAA 2091
Query 1893 GAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAATC------- 1959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 GAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAATCTAACTCT 2165
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2166 TCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATAATGACAGAAGAAATGTTGTTTAGACTATTATTTT 2239
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2240 TGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATACAATGCATACTGTTGGAGAACAAGAATGCTACTGT 2313
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2314 ATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAAAGTAGTTTTAACAACTTTACACTGGAATGATTTA 2387
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2388 GCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATATGATATTGCAGTTTTACTAGGCAAATCTTCAAAAG 2461
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2462 ATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGCTTCCACATTGTACAGAATGAGCAGTCATGTAATG 2535
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2536 AATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTTTCTTTCTTTTATTCTTCTCCTTCTTTTTTTTTCA 2609
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2610 GAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGTGAAAGTTTACTGGCTTTATTAGCAAGTTCCTTTT 2683
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2684 TACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAGTGTGGTTTTTAACAGATAATACATTTCTTCCACA 2757
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2758 TTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACACATCGTGTTCATGATAGTGTATATTTTACTACTT 2831
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2832 TTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCCATTAAATATAGAAGCCAACTTTTTACCTTTTGAA 2905
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2906 ATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTTTCTTATTTGTTGAGTGCTATTACCAGGAGAAATT 2979
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2980 CAAATAAATATTCAATTTCATTATGAATTTCATTATTTATTTATAATAGTTTTTCTTTTATAAATAATTTTTCT 3053
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3054 TTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACGTGGATAAAATAACTATCAGTATAAAAATATTCTT 3127
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3128 TTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAAACCACTAAGGCACTTAGTGGCCACTTGCTGTATA 3201
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3202 GAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAACTAGCACCTAACCCAGGTAGACTCTGCAGCCCTGG 3275
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3276 GGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAGTACCAGAAGGCTAACTTAGGAGCTGTGAGGGGCC 3349
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3350 CCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACTGCCCCTGCTCCTGTAAGAAATGAAATGTTGATGG 3423
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3424 AGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAAGAGGGAATGGCTAAAAGTTAGCAGAGGAGCTATG 3497
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3498 CAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGATATAAGTAGATGAAAAATACTTTCATCTGTGTTAT 3571
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3572 GAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTGTTTTAGACACTTAAAATATAAGAACTGCCTTACA 3645
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3646 GAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTCTGCAAACAAATATGAATGCCTAGGGCCTACTTGA 3719
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3720 TGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGAAGTAAGTCTCATTCTAAGTTTTACTAAAGATTGT 3793
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3794 GGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGACAGCTGAACTATTTTAATTCAACAAGTTATATCAT 3867
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3868 TATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACACAGACACATTCCAAATTTTAGAGACATTGTATCTG 3941
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3942 TCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTAGGTACTGGTTAAACATTAGTTGAATAAATTGATG 4015
Query 1960 --------------- 1959
Sbjct 4016 CATTGGACAACTTAA 4030
