Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12996
- Subject:
- XR_001747261.2
- Aligned Length:
- 4267
- Identities:
- 1901
- Gaps:
- 2363
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCGTTGTCGGCCAGTGCCTTCCGTGAAGTTGCTCGCCGGGTCGTTGGGCCCTGTCGACCTGTAGGCGGGCGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGAGCCAGCGGACAAGACTGCGGGTACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTCAAACCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTTTGCCTAGAACTGGAATACAGTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTGTTATTTCT 370
Query 1 ------------------------------------------------------------------ATGGAACT 8
||||||||
Sbjct 371 GTGAAAGCAAAAATTCGAAGATTGGAAGGTATTCCCATCTGTCGACAACACTTAATTTGGAATAACATGGAACT 444
Query 9 TGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGGACCTTGAAGCTAGTTTTGGCTATGCGTG 82
|||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 445 TGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGTACCTTGAAGCTAGTTTTGGCTATGCGTG 518
Query 83 GCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGACGATGGCAGAGTACTTGGATTCCAGT 156
||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 519 GCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGATGGCAGAGTACTTGGATTCCAGT 592
Query 157 CGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATT 666
Query 231 GAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATT 740
Query 305 TTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGAT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGAT 814
Query 379 GAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAA 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAA 888
Query 453 GCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACC 962
Query 527 CACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAAC 1036
Query 601 ATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTT 1110
Query 675 GGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGG 1184
Query 749 AGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAAT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAAT 1258
Query 823 GACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAA 1332
Query 897 CTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAG 1406
Query 971 TGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTG 1480
Query 1045 AATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGG 1554
Query 1119 AGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCT 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCT 1628
Query 1193 TGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGT 1702
Query 1267 TTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTC 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTC 1776
Query 1341 TAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGG 1414
||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1777 TAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGG 1850
Query 1415 CTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTT 1924
Query 1489 GCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGG 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 GCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGG 1998
Query 1563 AACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATA 2072
Query 1637 CAGGAGTTTTTTTGTCTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAA 1710
||||||||||||| ||||||
Sbjct 2073 CAGGAGTTTTTTT-------------------------------------------------------GGAGAA 2091
Query 1711 TGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCT 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 TGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCT 2165
Query 1785 TTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTT 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 TTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTT 2239
Query 1859 ATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTG 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 ATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTG 2313
Query 1933 GTTAATGCACCAAAGCTTCCAAAAATC----------------------------------------------- 1959
|||||||||||||||||||||||||||
Sbjct 2314 GTTAATGCACCAAAGCTTCCAAAAATCTAACTCTTCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATA 2387
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2388 ATGACAGAAGAAATGTTGTTTAGACTATTATTTTTGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATAC 2461
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2462 AATGCATACTGTTGGAGAACAAGAATGCTACTGTATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAA 2535
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2536 AGTAGTTTTAACAACTTTACACTGGAATGATTTAGCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATAT 2609
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2610 GATATTGCAGTTTTACTAGGCAAATCTTCAAAAGATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGC 2683
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2684 TTCCACATTGTACAGAATGAGCAGTCATGTAATGAATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTT 2757
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2758 TCTTTCTTTTATTCTTCTCCTTCTTTTTTTTTCAGAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGT 2831
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2832 GAAAGTTTACTGGCTTTATTAGCAAGTTCCTTTTTACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAG 2905
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2906 TGTGGTTTTTAACAGATAATACATTTCTTCCACATTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACA 2979
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2980 CATCGTGTTCATGATAGTGTATATTTTACTACTTTTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCC 3053
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3054 ATTAAATATAGAAGCCAACTTTTTACCTTTTGAAATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTT 3127
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3128 TCTTATTTGTTGAGTGCTATTACCAGGAGAAATTCAAATAAATATTCAATTTCATTATGAATTTCATTATTTAT 3201
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3202 TTATAATAGTTTTTCTTTTATAAATAATTTTTCTTTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACG 3275
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3276 TGGATAAAATAACTATCAGTATAAAAATATTCTTTTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAA 3349
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3350 ACCACTAAGGCACTTAGTGGCCACTTGCTGTATAGAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAAC 3423
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3424 TAGCACCTAACCCAGGTAGACTCTGCAGCCCTGGGGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAG 3497
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3498 TACCAGAAGGCTAACTTAGGAGCTGTGAGGGGCCCCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACT 3571
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3572 GCCCCTGCTCCTGTAAGAAATGAAATGTTGATGGAGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAA 3645
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3646 GAGGGAATGGCTAAAAGTTAGCAGAGGAGCTATGCAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGAT 3719
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3720 ATAAGTAGATGAAAAATACTTTCATCTGTGTTATGAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTG 3793
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3794 TTTTAGACACTTAAAATATAAGAACTGCCTTACAGAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTC 3867
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3868 TGCAAACAAATATGAATGCCTAGGGCCTACTTGATGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGA 3941
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3942 AGTAAGTCTCATTCTAAGTTTTACTAAAGATTGTGGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGAC 4015
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4016 AGCTGAACTATTTTAATTCAACAAGTTATATCATTATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACAC 4089
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4090 AGACACATTCCAAATTTTAGAGACATTGTATCTGTCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTA 4163
Query 1960 ------------------------------------------------- 1959
Sbjct 4164 GGTACTGGTTAAACATTAGTTGAATAAATTGATGCATTGGACAACTTAA 4212
