Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13007
• Subject: XM_006505211.3
• Aligned Length: 1127
• Identities: 734
• Gaps: 280

Alignment

Query    1  ATGTCCCTCCGGAGGCACATTGGGAACCCTGAGTATCTGATGAAAAGGATACCACAGAACCCAAGATACCAGCA  74
            |||||...||||||||||||||||||.|||||||||||||..|.|.|||||||||||||||||||.||.||.||
Sbjct    1  ATGTCTGCCCGGAGGCACATTGGGAATCCTGAGTATCTGACCAGACGGATACCACAGAACCCAAGGTATCAACA  74

Query   75  TATCAAATCAAGACTGGACACTGGTAACAGTATGACTAAATATACTGAGAAGCTCGAAGAGATTAAGAAAAATT  148
            |.||||.|||||||||||.||||                                                |||
Sbjct   75  TGTCAAGTCAAGACTGGATACTG------------------------------------------------ATT  100

Query  149  ATAGATACAAAAAAGATGAGCTTTTCAAGAGACTAAAAGTTACAACTTTTGCCCAGCTGATCATCCAAGTTGCT  222
            |||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||.||||.|||||.|||
Sbjct  101  ATAGATACAAAAAAGATGAACTTTTCAAGAGACTAAAAGTTACCACTTTTGCCCAGCTGGTCATTCAAGTCGCT  174

Query  223  TCCCTCTCTGATCAAACACTGGAAGTGACAGCTGAGGAGATTCAAAGGCTGGAAGACAATGATTCTGCAGCTTC  296
            |||||.||.||||||||||||||||||||||||||||||||.||||||||.||||||||||||||||||.||||
Sbjct  175  TCCCTGTCAGATCAAACACTGGAAGTGACAGCTGAGGAGATCCAAAGGCTCGAAGACAATGATTCTGCAACTTC  248

Query  297  AGACCCTGATGCTGAAACCACTGCCAGGACCAATGGGAAAGGAAATCCAGGTGAGCAGTCGCCGAGCCCTGAGC  370
            |||..||||||||||||...||||||.|||.|||||||||||.|..||.|..||.|||||.||.|||||||..|
Sbjct  249  AGAGGCTGATGCTGAAATTGCTGCCAAGACAAATGGGAAAGGGAGCCCTGAGGAACAGTCACCCAGCCCTGTCC  322

Query  371  AGTTCATAAACAACGCAGGAGCAGGGGACTCCAGCCGCTCAACTCTTCAGAGTGTCATCAGTGGTGTTGGGGAA  444
            |||||||.||||.|.|.|||||||||||||||||||||||.|||||.|||||.|||||||||||.|||||||||
Sbjct  323  AGTTCATCAACAGCACGGGAGCAGGGGACTCCAGCCGCTCCACTCTGCAGAGCGTCATCAGTGGCGTTGGGGAA  396

Query  445  CTGGATCTAGACAAAGGGCCAGTGAAGAAAGCAGAGCCCCATACCAAAGACAAACCTTATCCTGACTGCCCCTT  518
            ||||||.||||||||||||..||.|||||||.|||.|||.||..|||||||||.||||||||.|||||.|||||
Sbjct  397  CTGGATGTAGACAAAGGGCTCGTAAAGAAAGAAGAACCCAATGGCAAAGACAAGCCTTATCCGGACTGTCCCTT  470

Query  519  CCTGCTGCTAGATGTGCGTGATAGAGATTCTTACCAGCAGTGCCACATTGTTGGAGCTTACAGTTACCCAATTG  592
            |||||||||||||||.||.||.|||||||||||.||||||||.||||||||.||.||||||||||||||.||||
Sbjct  471  CCTGCTGCTAGATGTTCGAGACAGAGATTCTTATCAGCAGTGTCACATTGTCGGGGCTTACAGTTACCCCATTG  544

Query  593  CAACTCTGTCTAGAACAATGAACCCTTATTCAAATGATATTCTTGAATATAAAAATGCCCATGGCAAGATCATC  666
            |||||||.||.||.|||||||||||.|||||||||||.||||||||.||.||.||.|||||.||||||||||||
Sbjct  545  CAACTCTATCCAGGACAATGAACCCCTATTCAAATGACATTCTTGAGTACAAGAACGCCCACGGCAAGATCATC  618

Query  667  ATTCTGTATGACGATGATGAAAGGCTGGCCAGTCAGGCGGCCACCACCATGTGCGAGCGTGGATTTGAAAACCT  740
            ||..|.||.|||||.||.||.|||||||||||.||||||||||||||||||||.||||||||.|||||||||||
Sbjct  619  ATCTTATACGACGAGGACGAGAGGCTGGCCAGCCAGGCGGCCACCACCATGTGTGAGCGTGGGTTTGAAAACCT  692

Query  741  CTTCATGCTTTCCGGAG---------------------------------------------------------  757
            |||||||||||||||.|                                                         
Sbjct  693  CTTCATGCTTTCCGGGGGTCTGAAAGTCTTAGCTCAGAAGTTCCCAGAAGGACTGGTCACTGGTTCCCTGCCAG  766

Query  758  --------------------------------------------------------------------------  757
                                                                                      
Sbjct  767  CCTCTTGCCAGCAGGCCCTCCCTTTTGGTTCTGTCCGGAAACGACGTGGCCCCAAAATGCCAGCCCTGCCAGCT  840

Query  758  --------------------------------------------------------------------------  757
                                                                                      
Sbjct  841  GAGAACAAGTGGAGATTTACCCCAGAAGACTTAAAAAAGATAGAATGTTACCTGGAAGAGGACCAGGGACCAGC  914

Query  758  -----------GCCGACTGAACCAAGCTAACTCCTCCGGAAGAGAGTCCAAGGTGCCTG-GTGCCCGAAGCGCT  819
                       |||||||||||||...||||||..|.||||.|||.||.||||||.||| .||||    |||.|
Sbjct  915  AGACAACCCTAGCCGACTGAACCAGAATAACTCTGCTGGAAAAGACTCGAAGGTGGCTGCTTGCC----GCGGT  984

Query  820  ---CAGAATCTG----CCAGGTGGCGGCCCCGCCAGCCACTCAAACCCCCGCTCCCTCAGCAGTGGTCACCTGC  886
               |||||.|||    |||    ||.|.||.|||||||||||.|.|||||||.|.||||.|||.||||||||||
Sbjct  985  GGCCAGAACCTGCCCACCA----GCTGTCCTGCCAGCCACTCGAGCCCCCGCACGCTCACCAGCGGTCACCTGC  1054

Query  887  AAGGCAAACCCTGGAAG  903
            |||||||||||||||||
Sbjct 1055  AAGGCAAACCCTGGAAG  1071