Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13020
- Subject:
- NM_001080948.2
- Aligned Length:
- 2172
- Identities:
- 996
- Gaps:
- 1068
Alignment
Query 1 ATGTTGCTTTTCGTGGAGCAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 74
||| |||| ||||||||||..||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATG--GCTT----TGGAGCAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 68
Query 75 TGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACAT 148
|.||.||||||||.|.||||.| ||||.||.|||||||..||||||||||||||..|||||.||||
Sbjct 69 TCCTTCTGGAAATCCGGATGGC---------ACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACAT 133
Query 149 CAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCA 222
|.||..||||.||||||||..||.||||.||.|||||||||||.|||||.|||||||||||||||||||||.||
Sbjct 134 CTGGATCTCACCCTGAGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCA 207
Query 223 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 296
|||||||||||||||||.||||||.|||...|||||||.|||.|||||||.|||||.||||||||.|||||.||
Sbjct 208 TCTTGTGAAACCACAAGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAGACCT 281
Query 297 GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 370
||||||||||.|.|||||||||||.||||||||||.|||||||.|||||||||||||..|||||||||||||||
Sbjct 282 GAGTTACCAACTCTATGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGAATGTCTGA 355
Query 371 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 444
|.||||||||.|||||||||||.||||||||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct 356 AAAAACAATTGGAATTCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCTCAAATGGATAGT 429
Query 445 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 518
|||||||||.|||||||.|||||.||||||||||||||||||||.|||||.|||||||||.|..|.|||.||||
Sbjct 430 GATCAGTTCGTCCCAATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTACAAATACAGATTTAAT 503
Query 519 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 592
|||||||||.||.||||||||.||.|||||||||||||||||||||||.||.||.|||||||||||||||||||
Sbjct 504 TCTTGAAGTATTGAGATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAAGGTGAGACCAAGTCATAAGC 577
Query 593 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 666
|.||||||||.|||||.||||||||||||||.|||||.||..|||||||||||||||.||||||.||||.||||
Sbjct 578 GATGTATTGTGATTCTCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAAGTGAAAGCTTTGTTTAAAAATGAA 651
Query 667 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 740
||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct 652 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCGCACAACAGCAACTGGTACATCACTTTCCAGTCAGACACAGA 725
Query 741 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA 814
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 726 TGCACAGCAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATCATGGCAAGGATAA 799
Query 815 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||.||.|||||.
Sbjct 800 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATGTATACTCAACCTATTCAG 873
Query 889 ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG 962
||||...|.||.|||.||||.||||||||.|||||.||.||.||||||||| ||.||||||||.||.|||||
Sbjct 874 ACTCCTACCCAATATCCCTCACCAGTCTTCATGCAACCAGTGTATAATCCT---CAGCAGTACTCAGTGTATAG 944
Query 963 TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1036
|.||||||||||||||||||||||||.||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TCTTGTGCCTCAGTCTTGGTCTCCAAGTCCTGCACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1018
Query 1037 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATT- 1109
||||||||||||||||||.|||.|||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1019 GTTTTGTGAATGGCTTTAGTTCACCAGGATCTTACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTC 1092
Query 1110 CCAAAAAATCGTG------------------------------------------------------------- 1122
|||||||||||||
Sbjct 1093 CCAAAAAATCGTGTGAAGCCTCATTTTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATT 1166
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1167 GGGGGATGGACCACTGAGCAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGC 1240
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1241 AGCAGGAACAAACTTATCTTCCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGC 1314
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1315 AGGCGAACTCTCTTCAGAGGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGA 1388
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1389 AGCCAAGGCTCCAACTCCGAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAG 1462
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1463 TGCCAGATGAACTTGGTTTGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAG 1536
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1537 GACGTGCGAGTTAGTTGCCCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCATAAG 1610
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1611 TCCTAGTCCTCCGTGTACAGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATGGAGGACT 1684
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1685 CTGCTGTTCCAAAGGACACTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAAAGCCATCCCCG 1758
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1759 GCAAACACGGCTTCACCTTGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCAGGAACCTCGAAAGTT 1832
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1833 AAGCTATGCTGAAGTGTGCCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTACAGCCGCTGCGGGAACTCC 1906
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1907 GGTCTAATGCAGTATCCCCCACCAGAAATGAAGAGAACGGAGCTCCCGAGAAGCCTGTTGAGAAGCCGCATGAG 1980
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1981 AAACCAGAAACAAGGGCTAGTAAGGATCATTCTGGCTTCCGAGGCAACACTATTCCCAGGGGAGCGGCTGGAAA 2054
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 2055 AATCAGGGAACAGAGACGCCAGTTCAGCCATAGGGCTACACCTCAGGGAGTGACTCGACGTAATGGGAAAGAGC 2128
Query 1123 -------------------------- 1122
Sbjct 2129 AATACGTGCCACCCAGATCACCAAAG 2154
