Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13020
- Subject:
- NM_001284522.1
- Aligned Length:
- 2172
- Identities:
- 992
- Gaps:
- 1071
Alignment
Query 1 ATGTTGCTTTTCGTGGAGCAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 74
||| ||||| |.||||..||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATG--GCTTT-------GGAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 65
Query 75 TGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACAT 148
|.||.||||||||.|.||||.| ||||.||.|||||||..||||||||||||||..|||||.||||
Sbjct 66 TCCTTCTGGAAATCCGGATGGC---------ACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACAT 130
Query 149 CAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCA 222
|.||..||||.||||||||..||.||||.||.|||||||||||.|||||.|||||||||||||||||||||.||
Sbjct 131 CTGGATCTCACCCTGAGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCA 204
Query 223 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 296
|||||||||||||||||.||||||.|||...|||||||.|||.|||||||.|||||.||||||||.|||||.||
Sbjct 205 TCTTGTGAAACCACAAGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAGACCT 278
Query 297 GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 370
||||||||||.|.|||||||||||.||||||||||.|||||||.|||||||||||||..|||||||||||||||
Sbjct 279 GAGTTACCAACTCTATGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGAATGTCTGA 352
Query 371 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 444
|.||||||||.|||||||||||.||||||||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct 353 AAAAACAATTGGAATTCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCTCAAATGGATAGT 426
Query 445 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 518
|||||||||.|||||||.|||||.||||||||||||||||||||.|||||.|||||||||.|..|.|||.||||
Sbjct 427 GATCAGTTCGTCCCAATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTACAAATACAGATTTAAT 500
Query 519 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 592
|||||||||.||.||||||||.||.|||||||||||||||||||||||.||.||.|||||||||||||||||||
Sbjct 501 TCTTGAAGTATTGAGATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAAGGTGAGACCAAGTCATAAGC 574
Query 593 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 666
|.||||||||.|||||.||||||||||||||.|||||.||..|||||||||||||||.||||||.||||.||||
Sbjct 575 GATGTATTGTGATTCTCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAAGTGAAAGCTTTGTTTAAAAATGAA 648
Query 667 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 740
||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct 649 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCGCACAACAGCAACTGGTACATCACTTTCCAGTCAGACACAGA 722
Query 741 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA 814
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 723 TGCACAGCAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATCATGGCAAGGATAA 796
Query 815 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||.||.|||||.
Sbjct 797 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATGTATACTCAACCTATTCAG 870
Query 889 ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG 962
||||...|.||.|||.||||.||||||||.|||||.||.||.||||||||| ||.||||||||.||.|||||
Sbjct 871 ACTCCTACCCAATATCCCTCACCAGTCTTCATGCAACCAGTGTATAATCCT---CAGCAGTACTCAGTGTATAG 941
Query 963 TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1036
|.||||||||||||||||||||||||.||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TCTTGTGCCTCAGTCTTGGTCTCCAAGTCCTGCACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1015
Query 1037 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATT- 1109
||||||||||||||||||.|||.|||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1016 GTTTTGTGAATGGCTTTAGTTCACCAGGATCTTACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTC 1089
Query 1110 CCAAAAAATCGTG------------------------------------------------------------- 1122
|||||||||||||
Sbjct 1090 CCAAAAAATCGTGTGAAGCCTCATTTTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATT 1163
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1164 GGGGGATGGACCACTGAGCAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGC 1237
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1238 AGCAGGAACAAACTTATCTTCCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGC 1311
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1312 AGGCGAACTCTCTTCAGAGGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGA 1385
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1386 AGCCAAGGCTCCAACTCCGAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAG 1459
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1460 TGCCAGATGAACTTGGTTTGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAG 1533
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1534 GACGTGCGAGTTAGTTGCCCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCATAAG 1607
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1608 TCCTAGTCCTCCGTGTACAGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATGGAGGACT 1681
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1682 CTGCTGTTCCAAAGGACACTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAAAGCCATCCCCG 1755
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1756 GCAAACACGGCTTCACCTTGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCAGGAACCTCGAAAGTT 1829
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1830 AAGCTATGCTGAAGTGTGCCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTACAGCCGCTGCGGGAACTCC 1903
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1904 GGTCTAATGCAGTATCCCCCACCAGAAATGAAGAGAACGGAGCTCCCGAGAAGCCTGTTGAGAAGCCGCATGAG 1977
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1978 AAACCAGAAACAAGGGCTAGTAAGGATCATTCTGGCTTCCGAGGCAACACTATTCCCAGGGGAGCGGCTGGAAA 2051
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 2052 AATCAGGGAACAGAGACGCCAGTTCAGCCATAGGGCTACACCTCAGGGAGTGACTCGACGTAATGGGAAAGAGC 2125
Query 1123 -------------------------- 1122
Sbjct 2126 AATACGTGCCACCCAGATCACCAAAG 2151
