Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13020
- Subject:
- NM_001284523.1
- Aligned Length:
- 2172
- Identities:
- 1000
- Gaps:
- 1062
Alignment
Query 1 ATGTTGCTTTTCGTGGAGCAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 74
||||||||.|||||.||||||||..||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGCTCTTCGTTGAGCAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 74
Query 75 TGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACAT 148
|.||.||||||||.|.||||.| ||||.||.|||||||..||||||||||||||..|||||.||||
Sbjct 75 TCCTTCTGGAAATCCGGATGGC---------ACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACAT 139
Query 149 CAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCA 222
|.||..||||.||||||||..||.||||.||.|||||||||||.|||||.|||||||||||||||||||||.||
Sbjct 140 CTGGATCTCACCCTGAGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCA 213
Query 223 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 296
|||||||||||||||||.||||||.|||...|||||||.|||.|||||||.|||||.||||||||.|||||.||
Sbjct 214 TCTTGTGAAACCACAAGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAGACCT 287
Query 297 GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 370
||||||||||.|.|||||||||||.||||||||||.|||||||.|||||||||||||..|||||||||||||||
Sbjct 288 GAGTTACCAACTCTATGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGAATGTCTGA 361
Query 371 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 444
|.||||||||.|||||||||||.||||||||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct 362 AAAAACAATTGGAATTCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCTCAAATGGATAGT 435
Query 445 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 518
|||||||||.|||||||.|||||.||||||||||||||||||||.|||||.|||||||||.|..|.|||.||||
Sbjct 436 GATCAGTTCGTCCCAATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTACAAATACAGATTTAAT 509
Query 519 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 592
|||||||||.||.||||||||.||.|||||||||||||||||||||||.||.||.|||||||||||||||||||
Sbjct 510 TCTTGAAGTATTGAGATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAAGGTGAGACCAAGTCATAAGC 583
Query 593 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 666
|.||||||||.|||||.||||||||||||||.|||||.||..|||||||||||||||.||||||.||||.||||
Sbjct 584 GATGTATTGTGATTCTCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAAGTGAAAGCTTTGTTTAAAAATGAA 657
Query 667 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 740
||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct 658 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCGCACAACAGCAACTGGTACATCACTTTCCAGTCAGACACAGA 731
Query 741 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA 814
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 732 TGCACAGCAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATCATGGCAAGGATAA 805
Query 815 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||.||.|||||.
Sbjct 806 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATGTATACTCAACCTATTCAG 879
Query 889 ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG 962
||||...|.||.|||.||||.||||||||.|||||.||.||.||||||||| ||.||||||||.||.|||||
Sbjct 880 ACTCCTACCCAATATCCCTCACCAGTCTTCATGCAACCAGTGTATAATCCT---CAGCAGTACTCAGTGTATAG 950
Query 963 TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1036
|.||||||||||||||||||||||||.||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TCTTGTGCCTCAGTCTTGGTCTCCAAGTCCTGCACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1024
Query 1037 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATT- 1109
||||||||||||||||||.|||.|||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1025 GTTTTGTGAATGGCTTTAGTTCACCAGGATCTTACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTC 1098
Query 1110 CCAAAAAATCGTG------------------------------------------------------------- 1122
|||||||||||||
Sbjct 1099 CCAAAAAATCGTGTGAAGCCTCATTTTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATT 1172
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1173 GGGGGATGGACCACTGAGCAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGC 1246
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1247 AGCAGGAACAAACTTATCTTCCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGC 1320
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1321 AGGCGAACTCTCTTCAGAGGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGA 1394
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1395 AGCCAAGGCTCCAACTCCGAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAG 1468
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1469 TGCCAGATGAACTTGGTTTGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAG 1542
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1543 GACGTGCGAGTTAGTTGCCCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCATAAG 1616
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1617 TCCTAGTCCTCCGTGTACAGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATGGAGGACT 1690
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1691 CTGCTGTTCCAAAGGACACTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAAAGCCATCCCCG 1764
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1765 GCAAACACGGCTTCACCTTGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCAGGAACCTCGAAAGTT 1838
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1839 AAGCTATGCTGAAGTGTGCCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTACAGCCGCTGCGGGAACTCC 1912
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1913 GGTCTAATGCAGTATCCCCCACCAGAAATGAAGAGAACGGAGCTCCCGAGAAGCCTGTTGAGAAGCCGCATGAG 1986
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1987 AAACCAGAAACAAGGGCTAGTAAGGATCATTCTGGCTTCCGAGGCAACACTATTCCCAGGGGAGCGGCTGGAAA 2060
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 2061 AATCAGGGAACAGAGACGCCAGTTCAGCCATAGGGCTACACCTCAGGGAGTGACTCGACGTAATGGGAAAGAGC 2134
Query 1123 -------------------------- 1122
Sbjct 2135 AATACGTGCCACCCAGATCACCAAAG 2160
