Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13021
- Subject:
- NM_001080948.2
- Aligned Length:
- 2154
- Identities:
- 509
- Gaps:
- 1590
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCTTTGGAGCAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAATTCCTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGAAATCCGGATGGCACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACATCTGGATCTCACCCTG 148
Query 1 -----------------------------------------------ATGTATTCTTCATCTTGTGAAACCACA 27
|||||||||.|||||||||||||||||
Sbjct 149 AGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCATCTTGTGAAACCACA 222
Query 28 AGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCTGAGTTACCAAATATA 101
||.||||||.|||...|||||||.|||.|||||||.|||||.||||||||.|||||.||||||||||||.|.||
Sbjct 223 AGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAGACCTGAGTTACCAACTCTA 296
Query 102 TGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGAAGAAACAATTAGAAT 175
|||||||||.||||||||||.|||||||.|||||||||||||..||||||||||||||||.||||||||.||||
Sbjct 297 TGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGAATGTCTGAAAAAACAATTGGAAT 370
Query 176 TCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGTGATCAGTTCATCCCA 249
|||||||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||.|||||
Sbjct 371 TCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCTCAAATGGATAGTGATCAGTTCGTCCCA 444
Query 250 ATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAATTCTTGAAGTGTTAAG 323
||.|||||.||||||||||||||||||||.|||||.|||||||||.|..|.|||.|||||||||||||.||.||
Sbjct 445 ATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTACAAATACAGATTTAATTCTTGAAGTATTGAG 518
Query 324 ATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGCGTTGTATTGTAATTC 397
||||||.||.|||||||||||||||||||||||.||.||.||||||||||||||||||||.||||||||.||||
Sbjct 519 ATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAAGGTGAGACCAAGTCATAAGCGATGTATTGTGATTC 592
Query 398 TTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAAAACTGCCCCAAAGTG 471
|.||||||||||||||.|||||.||..|||||||||||||||.||||||.||||.|||||||||||||||||||
Sbjct 593 TCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAAGTGAAAGCTTTGTTTAAAAATGAAAACTGCCCCAAAGTG 666
Query 472 ATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGATGCACAACAGGCTTT 545
|||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 667 ATAAGCTGTGAGTTTGCGCACAACAGCAACTGGTACATCACTTTCCAGTCAGACACAGATGCACAGCAGGCTTT 740
Query 546 T--ATACTTAAGAGAAGAAGT----------------------------------------------------- 564
| ||||||||||||||||||
Sbjct 741 TAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATCATGGCAAGGATAAAAGCCATCAATACAT 814
Query 565 -------------------------------------------------------------------------- 564
Sbjct 815 TTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATGTATACTCAACCTATTCAGACTCCTACCCAATAT 888
Query 565 -------------------------------------------------------------------------- 564
Sbjct 889 CCCTCACCAGTCTTCATGCAACCAGTGTATAATCCTCAGCAGTACTCAGTGTATAGTCTTGTGCCTCAGTCTTG 962
Query 565 -------------------------------------------------------------------------- 564
Sbjct 963 GTCTCCAAGTCCTGCACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTAGTTTTGTGAATGGCTTTA 1036
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1037 GTTCACCAGGATCTTACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTCCCAAAAAATCGTGTGAAG 1110
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1111 CCTCATTTTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATTGGGGGATGGACCACTGAG 1184
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1185 CAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGCAGCAGGAACAAACTTATC 1258
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1259 TTCCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGCAGGCGAACTCTCTTCAGA 1332
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1333 GGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGAAGCCAAGGCTCCAACTCC 1406
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1407 GAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAGTGCCAGATGAACTTGGTT 1480
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1481 TGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAGGACGTGCGAGTTAGTTGC 1554
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1555 CCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCATAAGTCCTAGTCCTCCGTGTAC 1628
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1629 AGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATGGAGGACTCTGCTGTTCCAAAGGACA 1702
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1703 CTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAAAGCCATCCCCGGCAAACACGGCTTCACCT 1776
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1777 TGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCAGGAACCTCGAAAGTTAAGCTATGCTGAAGTGTG 1850
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1851 CCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTACAGCCGCTGCGGGAACTCCGGTCTAATGCAGTATCCC 1924
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1925 CCACCAGAAATGAAGAGAACGGAGCTCCCGAGAAGCCTGTTGAGAAGCCGCATGAGAAACCAGAAACAAGGGCT 1998
Query 565 -------------------------------------------------------------------------- 564
Sbjct 1999 AGTAAGGATCATTCTGGCTTCCGAGGCAACACTATTCCCAGGGGAGCGGCTGGAAAAATCAGGGAACAGAGACG 2072
Query 565 -------------------------------------------------------------------------- 564
Sbjct 2073 CCAGTTCAGCCATAGGGCTACACCTCAGGGAGTGACTCGACGTAATGGGAAAGAGCAATACGTGCCACCCAGAT 2146
Query 565 -------- 564
Sbjct 2147 CACCAAAG 2154
