Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13037
- Subject:
- NR_136580.1
- Aligned Length:
- 3184
- Identities:
- 1165
- Gaps:
- 1878
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCGTCTGAACCCGCCCCGGGGGTGCCAAGGTGCGTCTCCAGTCTGACGCGACCGCCTGGGGCGGAGTCAGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACGTGCCACCTGCAGTGCTGGCTAGGGCTTTTTATTTACTAGGGAGCAGTTTCCCCGCGCGACAGTTCGGGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCGCAGGCAGTCGCGCGCACACACGCACGCAGGCACACACACACACACACACACACACACACACACACTTTCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACACACAAACACGCTAGGACGCTCGTCTTCGCTACTGCATCCCCGAACCAGCAGAGCGAAGCTACTGCGGGTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGTTAACCTCAGCATCGTGGGGCGAAGCAGAGCCATTGTGCATCAAGGAGAGGCCGGTGCCTGCGCTGCCGTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTGGCACCTAACCCAGCAGACCGCTCACCCCATCGGCTGGAATGCTTGCTGATTCCTCTGCACACTTCTAAGG 444
Query 1 ----------------------------ATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCC 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGAGAACCTGAGGAACCCAGCTGGAAAATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCC 518
Query 47 AGAGGCTCTGCCACTCCGAATCTCACAATGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGAGGCTCTGCCACTCCGAATCTCACAATGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATC 592
Query 121 CTCTGCGACATCACCCTGATTGCTGAGGAACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGA 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTCTGCGACATCACCCTGATTGCTGAGGAACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGA 666
Query 195 CTATTTCCGGGCAATGTTCAGTCTTTGTATGGTGGAAAGTGGAGCTGATGAGGTTAATTTGCACGGTGTGACCA 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTATTTCCGGGCAATGTTCAGTCTTTGTATGGTGGAAAGTGGAGCTGATGAGGTTAATTTGCACGGTGTGACCA 740
Query 269 GCCTTGGCTTAAAGCAGGCTCTGGAGTTTGCATACACAGGACAGATTTTGCTGGAGCCAGGTGTGATCCAGGAT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCCTTGGCTTAAAGCAGGCTCTGGAGTTTGCATACACAGGACAGATTTTGCTGGAGCCAGGTGTGATCCAGGAT 814
Query 343 GTGCTAGCAGCGGGCAGTCACCTACAGCTGTTGGAGCTTCTCAATTTATGCTCCCACTATCTCATCCAGGAATT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGCTAGCAGCGGGCAGTCACCTACAGCTGTTGGAGCTTCTCAATTTATGCTCCCACTATCTCATCCAGGAATT 888
Query 417 AAATAGCTTTAATTACTTGGATCTGTACAGACTTGCTGACCTCTTTAACCTCACTTTGTTGGAGAAGGCAGTGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAATAGCTTTAATTACTTGGATCTGTACAGACTTGCTGACCTCTTTAACCTCACTTTGTTGGAGAAGGCAGTGA 962
Query 491 TCGATTTCTTAGTGAAACATCTCTCTGAACTCCTGAAGAGCCGCCCAGAAGAAGTTCTAACGCTTCCCTATTGC 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCGATTTCTTAGTGAAACATCTCTCTGAACTCCTGAAGAGCCGCCCAGAAGAAGTTCTAACGCTTCCCTATTGC 1036
Query 565 CTGCTTCAGGAGGTGCTGAAGAGCGACCGCCTGACCTCCCTGAGTGAAGAGCAGATCTGGCAG---------CT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1037 CTGCTTCAGGAGGTGCTGAAGAGCGACCGCCTGACCTCCCTGAGTGAAGAGCAGATCTGGCAGGTGGAGTAACT 1110
Query 630 A-----GC----TGTGA------------GGTGGTTGGAAC---------ACAACTG--------------CCA 659
| || |.|.| ||| ||..|||| |.||.|| |||
Sbjct 1111 AATACGGCACAATATCAGAACAGGCTAATGGT-GTATGAACCTAACCAGAATAAGTGGATAAGCCGTAGCCCCA 1183
Query 660 ----------------CTACCAGTACATGGACGAGCTCCTGCAATACA---------------TCCGCTTTGG- 701
||||||.|.||||| ||||..|||| || ||||
Sbjct 1184 TGCTGCAGAGAAGGGTCTACCATTCCATGG--------CTGCTGTACAAAGGAAGCTTTATGTTC----TTGGA 1245
Query 702 --------CCT-------AAT-------GGA----TGTG---------GATACT--CTCCATA---------CA 729
||| ||| ||| |||| |||.|| |..|||| ||
Sbjct 1246 GGCAATGACCTAGACTACAATAATGACCGGATCCTTGTGCGCCATATAGATTCTTACAACATAGACACTGACCA 1319
Query 730 GTTGCCCTG-------TCCCACCCCCT---------------------------TGTCCA-------AG----- 757
||.|.|..| |.|.|||..|| |||||| ||
Sbjct 1320 GTGGACACGTTGTAATTTCAACCTGCTGACTGGCCAAAATGAATCTGGAGTTGCTGTCCATAATGGGAGAATAT 1393
Query 758 ------------------CAAGTGAGAC---TGCAACAGCC-----CTTGTCAACGAGGCCCTGGA-ATACCAC 804
|||.|..||| || |||| ||||| |.|.|||..||||| .|| |.
Sbjct 1394 ATTTAGTTGGTGGATATTCAATTTGGACAAATG----AGCCTCTGGCTTGT-ATCCAGGTACTGGATGTA--AG 1460
Query 805 CAGAGCA----------------TCTATG------CACAGCCTGT--CTGGCA---GACTCGCAGGACCAAACC 851
|||||.| |||||| |||..|||.| ||..|| ||.|.|||| |
Sbjct 1461 CAGAGAAGGCAAAGAAGAAGTATTCTATGGGCCTACACTCCCTTTTGCTTCCAATGGAATAGCAG--------C 1526
Query 852 ACGATTCCAGTCAGACACTCTGTATAT--CATTGGTGGG-----------AAA------AAGCGC-------GA 899
|.|.||||...||| |||..|||.| ||| | ||| |||.|| .|
Sbjct 1527 ATGCTTCCTTCCAG---CTCCATATTTTACAT------GCCCTAACCTTCAAACTCTTCAAGTGCCTCATCACA 1591
Query 900 GG----------TCTGCAAGGTCAAGGAACTTCGGTACTTCAATCCTGTTGATCAGGAG---AATGCTCTCATA 960
|| ||||.||.|.|||| |.||| .|||.|||||| || ||||
Sbjct 1592 GGATTGGCACCATCTGAAAAGCCAAG--------------CCATC---ATGAACAGGAGGAAAA------CATA 1642
Query 961 GCT---GCCATTGCCAACTGG--------------AGTGAGCT---GGCTCCCATGCCTGTG-------GG--- 1004
||| .|..|||...||||| ||| ||| .|||.||.||.|| || ||
Sbjct 1643 GCTCTGACTGTTGGATACTGGGCATGAAAAGACTCAGT--GCTCCATGCTTCCTTGTCT-TGCTTTATAGGTCT 1713
Query 1005 -----------------AAGGA---------------------------------------GCCACCATTGT-- 1020
|||.| |.||||.||.|
Sbjct 1714 TATATTCGGATAAATTTAAGCAAAAAATGAACAATTTTCTAAAATACGTTATTGAAAACTCGTCACCCTTCTCA 1787
Query 1021 GTGGCAGTC----------ATGGGGGACTTCCTGTTTGTGGCAGGAGGGGAAGTTGAGCATGCCA--------- 1075
|||...||| |||...||||| |..||||||.| .||.|.|| |||||
Sbjct 1788 GTGTATGTCAACATTCAATATGTATGACTT--TTATTGTGGTA-------TAGCTTAG--TGCCAATTTAAGGT 1850
Query 1076 -----GTGGCC---GG----------------------ACGTGTGCT-GTGAGGACTGCCTGTCGCTATGAC-- 1116
|||..| || ||.|.|.|| .|.||.||||.|| ||.|||
Sbjct 1851 ATATTGTGTTCCATGGGTCTTTAGAGCATTCTTTGTACACTTTTTCTAATCAGCACTGTCT-----TAAGACAA 1919
Query 1117 -----CCCCG-CAGTAA------TTCCTGGGCAGAGATAGCACCCATGA----AAAACT--------------- 1159
|.|.| .||||| ||..|||.||.| ||.|||.|.|||| ||||.|
Sbjct 1920 CATAACACTGTTAGTAAGGCAATTTATTGGACACA-ATGGCATCGATGATCTTAAAAATATATATATTCTGTAC 1992
Query 1160 ---------------------GCCGGG-------------------------AGCATTTTG------TGCTGGG 1181
|||||| |.||||.|| ||||..|
Sbjct 1993 TTAATCCCTTTATTATTTAAAGCCGGGCTTGTAATTTTTCTTTTTAAAATTTAACATTATGCAGCCCTGCTCAG 2066
Query 1182 ----------------------------------------TGCCAT-----------GG----AGGAATACCTC 1200
|||||| || |.|||||
Sbjct 2067 TAGAGACTCACTCAGCATTATGACATCATAAATTTTTAAATGCCATATTTTATTCAAGGTGATACGAATA---- 2136
Query 1201 TAT--------------------GCAGTTG----------------------------------------GGGG 1214
|| ||||||| |||.
Sbjct 2137 -ATAATAGACATACACTGGAACAGCAGTTGTTGAAATACCCAGATTTTTCACCTTGGTTACTCTGACCTTGGGT 2209
Query 1215 CAGAAATGAAC-------TGCGCCAGGTTCTGCCTACAGTT----GAGCGAT--------ATTGCCCC------ 1263
|||||...||| |||..||| |.|.||.||..|| ||| ||| |||.||.|
Sbjct 2210 CAGAACCTAACTTTACAGTGCTTCAG--TTTTCCCACCTTTTAAGGAG-GATAATTACTGATTTCCACGTTAAT 2280
Query 1264 --AAGAAGAACAAATGGACTTTTG----TTCAGTC-----CTTTGACAGATCCCTTTCATGCC----------- 1315
|| ||||||| ||.|| || ||.| |||||..|.| ||| ||||
Sbjct 2281 TTAA-AAGAACA-------TTATGAGGATT-AGGCGAACACTTTGTAATA---CTT---TGCCCAAGAAAAAGA 2339
Query 1316 ---ATGCTG-----GATAT------GTGGCTGATGGTCTT-----CTTTGGATAT----CAGGTAG-------- 1358
|||.|| ||.|| ||...|.||.||||| |.|||.| || ||||.||
Sbjct 2340 AAAATGTTGTTACTGAAATTATAAGGTATTTTATTGTCTTTAGAACCTTGTA-ATTGAACAGGGAGATTATTTT 2412
Query 1359 ---------AACATACCT----------------CATGTTG----------GATT----------TATCAAA-- 1385
||.||..|| ||||||| |||| |.|.|||
Sbjct 2413 TGAAGTTTAAAAATTACTAGATAGAATTTGGAAACATGTTGTGGAATAAATGATTCTAAAAAGCATGTGAAAGA 2486
Query 1386 -ACACAC-----------------TTTC------------ATTGT---GGTATATA---TT------------- 1410
|||||| |||| .|||| |||||.|| ||
Sbjct 2487 GACACACAATGAGGAAATAGGGAGTTTCTCAAAATCTAAACTTGTACAGGTATCTAAACTTGCCTCAAGTAACT 2560
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2561 CTCAGATGTCTTATTTAAAATCATTTAGTGAAAAATGACATTTAAAGCTAAAAAATAATTTAGTTGTACTAATT 2634
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2635 ATGGTACCATAAAGTGCTTTGACATAAATTTGAACCTAGAATTGGCAGTTCTAATAAAAGTTTTTCCACTTTGT 2708
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2709 TAAAGGTTATGTCAATCTTGAGTGCTTGTGGAATTCTTCACCACCAATACATATTTTATTACTATCTCTTTTAA 2782
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2783 TAATGCATAGGAATTCTTTTTTAGACTAGTTTTTGGGTTTGCTTTGTCTATAACAAAAAATAAATACAACAACT 2856
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2857 TAATAATCACATTTGAAAACAAATTTAACAAGTATAATGTGAGTTTTTCTTTTTTCCTAACTTCCTCAGGACCT 2930
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2931 AGGTCACCTTTATTAAAAGGAAGAATTCACTCTTTTTTCCTTGGCAGTTTAATCATTCAGGAATCCCTCTCTTA 3004
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 3005 AAGGAAATTGTTATTTTATTCATGTAACCTTTTTTTGTAATCAAAAGTGAATAAAAACGATCTTTTTGTCTTAC 3078
Query 1411 -- 1410
Sbjct 3079 AG 3080
