Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13049
Subject:
XM_006513879.3
Aligned Length:
1669
Identities:
1235
Gaps:
251

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGCCGTACCCGGGCAGGAGGGGAATCCTATTCTATTGCCGTCAGTGAGGGGAGCATGTCAGCGTCTGCTGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCGGGGCTGGCTGCCCTGTCTGGCCCCAGCTCTGGCCTCAGCTCTGATCCGTGTTCTCCGATTCCCCCTGGAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGTAACTGGCCTGAGGAGATGGTTGGATCATTCCAAACATTGTCTCAGTGTGGAAACTGAGGCAGAGAGTGGT  222

Query    1  -----------ATGT-------------TGGAGCCAGCTCTAGCCACAGGAGAGGAGCTGCCGGAACTGACCTT  50
                       ||||             ||||||||.||.||.||||||||.|.||||||||.|||||||||||
Sbjct  223  CAGACCGGACAATGTGAGAACTGGACGCTGGAGCCAACTTTAACCACAGGACAAGAGCTGCCCGAACTGACCTT  296

Query   51  GCTGACCACACTGTTGGAGGGCCCTGGAGATAAGACGCAGCCACCTGAAGAGGAGACTTTGTCCCAAGCCCCTG  124
            .|||||.|||.||.|||||||.||||||||.|||.|.||||||.||||||||||.||||||||||||||.||..
Sbjct  297  ACTGACTACATTGCTGGAGGGTCCTGGAGACAAGGCACAGCCAGCTGAAGAGGAAACTTTGTCCCAAGCTCCCA  370

Query  125  AGAGTGAGGAGGAACAGAAGAAGAAGGCTCTGGAAAGGAGTATGTATGTCCTGAGTGAACTGGTAGAAACAGAG  198
            |||.||||||.||.||||||||||.||||||||||||||||||||.|||||||.||||.|||||.||||||||.
Sbjct  371  AGAATGAGGAAGAGCAGAAGAAGATGGCTCTGGAAAGGAGTATGTTTGTCCTGGGTGAGCTGGTGGAAACAGAA  444

Query  199  AAAATGTACGTGGACGACTTGGGGCAGATTGTGGAGGGTTATATGGCCACCATGGCTGCTCAGGGGGTCCCCGA  272
            |.||..||.||||||||||||||.|||||.||.||||||||.|||||.|||||||||.||||||||||.||.||
Sbjct  445  AGAACATATGTGGACGACTTGGGACAGATCGTAGAGGGTTACATGGCTACCATGGCTACTCAGGGGGTACCTGA  518

Query  273  GAGTCTTCGAGGCCGTGACAGGATTGTGTTTGGGAATATCCAGCAAATCTATGAGTGGCACCGAGACTATTTCT  346
            ||||||.|||||.|||||||||||||||||||||||.||.|||||.|||||||||||||||||||||||.|||.
Sbjct  519  GAGTCTCCGAGGTCGTGACAGGATTGTGTTTGGGAACATTCAGCAGATCTATGAGTGGCACCGAGACTACTTCC  592

Query  347  TGCAAGAGCTACAACGGTGTCTGAAAGATCCTGATTGGCTGGCTCAGCTATTCATCAAACACGAGCGCCGGCTG  420
            ||||.|||||.||.|.||||.||||||||||.||||||.||||||||||.|||||||||||.||||||||.|||
Sbjct  593  TGCAGGAGCTGCAGCAGTGTTTGAAAGATCCCGATTGGTTGGCTCAGCTGTTCATCAAACATGAGCGCCGACTG  666

Query  421  CATATGTATGTGGTGTACTGTCAGAATAAGCCCAAGTCAGAGCATGTGGTGTCAGAGTTTGGGGACAGCTACTT  494
            ||||||||||||||||||||.||||||||.||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  667  CATATGTATGTGGTGTACTGCCAGAATAAACCCAAGTCAGAGCATGTGCTGTCAGAGTTTGGGGACAGCTACTT  740

Query  495  TGAGGAGCTCCGGCAGCAGCTGGGGCACCGCCTGCAGCTGAACGACCTCCTCATCAAACCTGTGCAGCGGATCA  568
            |||||||||..|||||||||||||.|||||.||||||||.||.|||||||||||.|||||.||||||||.||||
Sbjct  741  TGAGGAGCTGAGGCAGCAGCTGGGACACCGACTGCAGCTCAATGACCTCCTCATTAAACCAGTGCAGCGAATCA  814

Query  569  TGAAATACCAGCTGCTGCTCAAGGATTTTCTCAAGTATTACAATAGAGCTGGGATGGATACTGCAGACCTAGAG  642
            |||||||||||.|||||||.|||||||||||.||||||||||..||||||||||.||||||||.|||.||.|||
Sbjct  815  TGAAATACCAGTTGCTGCTGAAGGATTTTCTAAAGTATTACAGAAGAGCTGGGAAGGATACTGAAGAGCTGGAG  888

Query  643  CAAGCTGTGGAGGTCATGTGCTTTGTGCCCAAGCGCTGCAACGATATGATGACGCTGGGGAGATTGCGGGGATT  716
            ||||||||||||||||||||.||.||.||.|||||.|||||.|||||||||.|.|||||||||.|.||||||||
Sbjct  889  CAAGCTGTGGAGGTCATGTGTTTCGTACCTAAGCGATGCAATGATATGATGTCCCTGGGGAGACTTCGGGGATT  962

Query  717  TGAGGGCAAACTGACTGCTCAGGGGAAGCTCTTGGGCCAGGACACTTTCTGGGTCACCGAGCCTGAGGCTGGAG  790
            ||||||.||||||||||||||||||||||||||||||||||||||.||||.|||.||.||||||||.|||||.|
Sbjct  963  TGAGGGAAAACTGACTGCTCAGGGGAAGCTCTTGGGCCAGGACACATTCTTGGTTACAGAGCCTGAAGCTGGGG  1036

Query  791  GGCTGCTATCTTCCCGAGGTCGAGAGAGGCGCGTCTTCCTCTTTGAGCAAATCATCATCTTCAGTGAAGCCCTG  864
            |.|||||.||||||||.|||||.||||||||.||||||||.||.|||||||||||||||||||||||.||||||
Sbjct 1037  GTCTGCTTTCTTCCCGGGGTCGGGAGAGGCGTGTCTTCCTGTTCGAGCAAATCATCATCTTCAGTGAGGCCCTG  1110

Query  865  GGAGGAGGAGTGAGAGGTGGAACACAGCCTGGATATGTATACAAGAACAGCATTAAGGTGAGCTGCCTGGGACT  938
            ||||||||||...|||||||..|.||||||||.||.||.||||||||||||||.||||||||||||||.||.||
Sbjct 1111  GGAGGAGGAGGCCGAGGTGGCGCGCAGCCTGGCTACGTGTACAAGAACAGCATCAAGGTGAGCTGCCTAGGGCT  1184

Query  939  GGAGGGGAACCTCCAAGGTGACCCTTGCCGCTTTGCACTGACCTCCAGAGGGCCAGAGGGTGGGATCCAGCGCT  1012
            |||||||||.||||||||..||||||||||.|||||.||||||||.|||||||||||.||||||||||||||||
Sbjct 1185  GGAGGGGAATCTCCAAGGCAACCCTTGCCGGTTTGCGCTGACCTCTAGAGGGCCAGAAGGTGGGATCCAGCGCT  1258

Query 1013  ATGTCCTGCAGGCTGCAGACCCTGCTATCAGTCAGGCCTGGATCAAGCATGTGGCTCAGATCTTGGAGAGCCAA  1086
            |.||.|||||||||.|||||||||||.|||||||.||||||||.|||||.|||||.||||||.||||.|||||.
Sbjct 1259  ACGTTCTGCAGGCTTCAGACCCTGCTGTCAGTCAAGCCTGGATAAAGCAAGTGGCCCAGATCCTGGAAAGCCAG  1332

Query 1087  CGGGACTTCCTCAACGCATTGCAGTCACCCATTGAGTACCAGAGACGGGAGAGCCAGACCAACAGCCTGGGGCG  1160
            ||.|||||.|||||||||||.||||||||||||||.|||||||||||.||||||||||||||.|||||||||||
Sbjct 1333  CGTGACTTTCTCAACGCATTACAGTCACCCATTGAATACCAGAGACGTGAGAGCCAGACCAATAGCCTGGGGCG  1406

Query 1161  GCCAAGAGGGCCTGGAGTGGGGAGCCCTGGAAGAATTCGGCTTGGAGATCAGGCCCAGGGCAGCACACACACAC  1234
            .|||.||||||||.|.||.|||||||||||.|||||.||||.||||||.|.||||||||.|||||..|||||||
Sbjct 1407  ACCAGGAGGGCCTTGGGTAGGGAGCCCTGGGAGAATGCGGCCTGGAGACCTGGCCCAGGCCAGCATGCACACAC  1480

Query 1235  CCATCAATGGCTCTCTCCCCTCTCTGCTGCTGTC-ACCCAAAGGGGAGGTGGCCAGAGCCCTCTTGCCACTGGA  1307
            |||||||||||||||||||.||.|||||.|| || .||||.||||||||||.||||||..||.|||||.|||||
Sbjct 1481  CCATCAATGGCTCTCTCCCTTCCCTGCTACT-TCTGCCCAGAGGGGAGGTGTCCAGAGTGCTGTTGCCCCTGGA  1553

Query 1308  TAAACAGGCCCTTGGTGACATCCCCCAGGCTCCCCATGACTCTCCTCCAGTCTCTCCAACTCCAAAAACCCCTC  1381
            ||.||||||.||..||||.|.|||||||.||||.|||||||   ||||||.|..|||.|||...||.||.||||
Sbjct 1554  TACACAGGCTCTCAGTGATACCCCCCAGACTCCTCATGACT---CTCCAGCCCTTCCCACTGTGAACACTCCTC  1624

Query 1382  CCTGCCAAGCCAGACTTGCCAAGCTGGATGAAGATGAGCTG  1422
            ||||.||.|||||.||.||||||||||||||||||||||||
Sbjct 1625  CCTGTCAGGCCAGGCTCGCCAAGCTGGATGAAGATGAGCTG  1665

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.